PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_21424_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 318aa MW: 34127.9 Da PI: 9.8689

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_21424_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.2	3.6e-38	70	130	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nkk++ Cotton_A_21424_BGI-A2_v1.0 70 PEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKKNK 130 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-35	54	125	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-32	73	128	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.217	74	128	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	76	112	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MVFSSVPIYL DPPNWQQHNH HQHGGVGTGS TENPQLPPLP PPSHVGVGGA GSIRPGSMAD 60 RARLAKIPQP EAALKCPRCE STNTKFCYFN NYSLSQPRHF CKTCRRYWTR GGALRSVPVG 120 GGCRRNKKNK SSSSKSTGSA QKQGGSNSTN AVNNNIPSEI TGHLPQQTPH LPFMASLQSF 180 SQFGMGNIGL NFGGSVNGGQ AEMGFHIGTN SGMSSPILSS AGHQQFPFFE PTNGLYSLQS 240 EGMEGSSSMM GESQLLRSIT SSSRVSQLAP VKMENNNNQG LNLSRSMMNN ASENNQYWGG 300 NNWTDLSGLN ASNTNHLL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017625350.1	0.0	PREDICTED: dof zinc finger protein DOF2.2-like isoform X2
TrEMBL	A0A1U8LZE5	0.0	A0A1U8LZE5_GOSHI; dof zinc finger protein DOF2.2-like isoform X2
STRING	Gorai.004G004800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1713	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	6e-49	OBF-binding protein 3