PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_21348_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 302aa MW: 32925.5 Da PI: 7.5856 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100.4 | 1.7e-31 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +C++C++lr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg Cotton_A_21348_BGI-A2_v1.0 4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVG 86 6********************************************************************************** PP DUF260 79 vilklqqqleqlkaelallke 99 +++++++ql+q+++e++l ++ Cotton_A_21348_BGI-A2_v1.0 87 LLWSGSWQLCQAAVEAVLKGA 107 ***************998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 4.7E-97 | 1 | 301 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 17.134 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.3E-25 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIT PIASEAAANG 120 QGPPLKAYDI RHVSKDENSA ASNDVQRVKT RCRVKKTLKP KVNNPVLEEE NRSSEPPEPR 180 CYADEGFEGN RSTSHESSLS HQSELAVMDG ESKETSSMIS EETVAASRLF PAGPELGGKV 240 LEERTVEGSS EIGLELTLGF KPVMSRACQV VVPVKKRRVE AYGTFEDSQT CKFELGLDYP 300 AA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017635006.1 | 0.0 | PREDICTED: LOB domain-containing protein 41 | ||||
Swissprot | Q9M886 | 1e-112 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A1U8LJV4 | 0.0 | A0A1U8LJV4_GOSHI; LOB domain-containing protein 41-like | ||||
TrEMBL | A0A2P5YLR5 | 0.0 | A0A2P5YLR5_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.008G056000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7721 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-105 | LOB domain-containing protein 41 |