PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21232_BGI-A2_v1.0
Common NameF383_27247
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CAMTA
Protein Properties Length: 968aa    MW: 107063 Da    PI: 7.9439
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21232_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1173.72.6e-54201363118
                        CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycy 84 
                                 +e ++rwl++ e+++iL n++k++l+ ++++rp+ gsl L++rk +ryfrkDG+ w+kkkdgktvrE+hekLK+g+v+vl+cy
  Cotton_A_21232_BGI-A2_v1.0  20 QEaQHRWLRPVEVCEILGNYTKFRLSDKPPSRPSAGSLYLFDRKTIRYFRKDGHDWRKKKDGKTVREAHEKLKIGSVDVLHCY 102
                                 5559******************************************************************************* PP

                        CG-1  85 YahseenptfqrrcywlLeeelekivlvhylevk 118
                                 Yah++ n++fqrrcyw+L+ ++e+iv+vhy+evk
  Cotton_A_21232_BGI-A2_v1.0 103 YAHGQFNENFQRRCYWMLDGQFEHIVFVHYREVK 136
                                 *******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.81615141IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-7418136IPR005559CG-1 DNA-binding domain
PfamPF038596.1E-4821134IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.2E-6419508IPR013783Immunoglobulin-like fold
CDDcd001022.04E-4420508No hitNo description
SuperFamilySSF812961.19E-16421507IPR014756Immunoglobulin E-set
SuperFamilySSF484034.66E-17597705IPR020683Ankyrin repeat-containing domain
CDDcd002041.00E-15599702No hitNo description
Gene3DG3DSA:1.25.40.204.0E-17604708IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.271610714IPR020683Ankyrin repeat-containing domain
PfamPF127961.2E-6615707IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.087643675IPR002110Ankyrin repeat
SMARTSM002480.0013643672IPR002110Ankyrin repeat
SMARTSM00248250682711IPR002110Ankyrin repeat
SMARTSM00015260761783IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525409.29E-10777866IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000155.6815837IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.242816845IPR000048IQ motif, EF-hand binding site
PfamPF006120.034818836IPR000048IQ motif, EF-hand binding site
SMARTSM000155.1E-4838860IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.798839863IPR000048IQ motif, EF-hand binding site
PfamPF006127.0E-5842860IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 968 aa     Download sequence    Send to blast
MAQGRRYLPS QQLDLQQILQ EAQHRWLRPV EVCEILGNYT KFRLSDKPPS RPSAGSLYLF  60
DRKTIRYFRK DGHDWRKKKD GKTVREAHEK LKIGSVDVLH CYYAHGQFNE NFQRRCYWML  120
DGQFEHIVFV HYREVKEGYR SGISCLLVDP GSQSESLQTG LAPSLTHENS PAATIQVSPT  180
STSKIGWNGK TSSSKFEDVD SGDDPSAVAP DQPIYGSKSC TASVEPEVAG FPESGRNPPG  240
SWLGESNFNH NTVSGSSFWP GSHHLATNNI SMLDHKLYVE QPTTSDFITK EAQVRLHDVS  300
DAVTCGDKLI NDGDVQAVGE YPEKLTQVVS TSMQNEKEPK GIGKNYDEPG ELKKLDSFGR  360
WMDKEIGGDC DDSLMASDSA NYWSTLNTET DDKEVSSLSC HMQLDIDSLG PSLSQEQLFS  420
IVDFSPDWAY SGVGTKVLLV GNFLKNKELP IAAKWGCMFG EIEVSAEVLT NNVIRCQVPS  480
HVPGRVPFYI TCSNRLACSE VREFEYREKP SGFSFITAVK CTAQEEMHLQ VCLAKLLHTG  540
SGRKWLDCSV EECDKCKLKS SICSMGVASA NDCIQSKEGL ILNLLKQKLS QWLIHKVHED  600
GKGPLILDDK GQGVIHLAAS LGYEWAMNPI VAAGISPNFR DAKGRTALHW ASYFGREEAV  660
IALIKLGASP GAVDDPTPSF PGGRTAADLA SSRGHKGIAG YLAEADLTTH LSSLTVNQNV  720
VGNDATTPAQ EAIGTSSEVA PSNGTLDDNC SLKGSLAAVR KSVHAAALIQ AAFRARSAHL  780
RQLTKGNDDM FEISLELGIL GSLNRLQKTS HFGDYLHTAA SKIQQKYRGW KGRKEFLKIR  840
NRIVKIQAHV RGHQVRKQYK KLVWSVGLVE KIILRWRRKG AGLRGFRVQT ATDKTVAGIK  900
IEDEYEFLQV GQQQKVDGIE KALARVKSMA RDQEACEQYM RLTTKFGESK NSDRGSSDSS  960
NAIVKSKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017646617.10.0PREDICTED: calmodulin-binding transcription activator 2-like
TrEMBLA0A0B0PEI30.0A0A0B0PEI3_GOSAR; Calmodulin-binding transcription activator 1-like protein
STRINGGorai.011G204700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16526911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein