PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21187_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 254aa    MW: 28299.8 Da    PI: 7.0978
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21187_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.5e-20133184256
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                  +kGVr+++ +g+++AeIrdp+ ng  +r++lg++ t+e+Aa a+++a+ k++g+
  Cotton_A_21187_BGI-A2_v1.0 133 NFKGVRRRP-WGKYAAEIRDPKRNG--ARIWLGTYETPEDAALAYDKAAFKMRGA 184
                                 58*******.**********98776..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.46E-31132193No hitNo description
Gene3DG3DSA:3.30.730.101.7E-31133192IPR001471AP2/ERF domain
PfamPF008477.7E-14133183IPR001471AP2/ERF domain
PROSITE profilePS5103223.393133191IPR001471AP2/ERF domain
SMARTSM003801.8E-37133197IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-23134192IPR016177DNA-binding domain
PRINTSPR003671.9E-12134145IPR001471AP2/ERF domain
PRINTSPR003671.9E-12173193IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MNVEILSESD FNILESFQRF FDGFDESPPP PPTTTPTCDD IVLQPFYNRC LSFSGVFLNE  60
NWGDLPLKID DSEDMLVYST LRDAANSGWS PSNEADSTTV SSEACSEGKE KLKEVVEREP  120
NVLLPPSSRR GTNFKGVRRR PWGKYAAEIR DPKRNGARIW LGTYETPEDA ALAYDKAAFK  180
MRGAKAKLNF PHLIGSSYCE PIRVGSRRRS LEPPSASTTS PKRRKSTAAV TNSTAPTEVI  240
QMSSCKPGGQ FWIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-29130197269ATERF1
3gcc_A5e-29130197269ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206224RRRSLEPPSASTTSPKRRK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016716638.11e-175PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K16e-63ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A2P5XIV60.0A0A2P5XIV6_GOSBA; Uncharacterized protein
STRINGGorai.004G165800.11e-165(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.16e-66ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]