PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21180_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 254aa    MW: 27989.7 Da    PI: 5.0209
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21180_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.9e-1887135355
                         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 ++GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Cotton_A_21180_BGI-A2_v1.0  87 FRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 135
                                 89***998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.95886143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-3186144IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-2186143IPR016177DNA-binding domain
SMARTSM003802.4E-3786149IPR001471AP2/ERF domain
CDDcd000189.51E-3287144No hitNo description
PRINTSPR003676.5E-108798IPR001471AP2/ERF domain
PfamPF008473.6E-1287135IPR001471AP2/ERF domain
PRINTSPR003676.5E-10109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEFGRDINIE NDASHCHNDL LSSYSIVSYT ATPTSSTCSS SSTSGCHPNG VAEKRLKKGG  60
DMENDDNENK KRQRSTCGNN DSKHGTFRGV RMRSWGKWVS EIREPRKKSR IWLGTYPTAE  120
MAARAHDVAA LAIKGPSAYL NFPEIAKQLP RPATTSPKDI QAAASQAAAS TFLDTRQCNV  180
ETEAGVSHEE LHNTQESSSS PSIDDDDTLF DLPDLIIDTA DRSDGFCSYS SSAWQICAVD  240
AGFRIEEPFS WDYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17821431072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625665.10.0PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ79e-63ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1U8LPZ10.0A0A1U8LPZ1_GOSHI; ethylene-responsive transcription factor ERF034-like
STRINGGorai.004G165300.11e-159(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.14e-46ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]