PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_21154_BGI-A2_v1.0

Common Name

F383_32332

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 248aa MW: 28646.4 Da PI: 6.8619

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_21154_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82	1e-25	77	167	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerr..traetrtgCkaklkvkkekdgkwevtk 80 +fY eYA+++GFs+r+++ ++s +n i+ r+fvCs+eg+r+ ++ + +++ +r++tr gCka++++ ++ gkw+vtk Cotton_A_21154_BGI-A2_v1.0 77 DFYFEYARRTGFSIRTNRIRHSLKNLAIIGRDFVCSREGFRAAKHVHrKDR--VlpPRPVTREGCKAMIRLAARDGGKWVVTK 157 6***************************************999882233..2459********************** PP FAR1 81 leleHnHela 90 ++ eH+H+l+ Cotton_A_21154_BGI-A2_v1.0 158 FVREHSHKLM 167 ******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-23	77	167	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MAGTAGPHEF SDTDRSSEDE TAVNMAKYKG IRQELLQEQN IMDNEFISSE QANEALGLGN 60 LEPYTGMTFQ SLDDARDFYF EYARRTGFSI RTNRIRHSLK NLAIIGRDFV CSREGFRAAK 120 HVHRKDRVLP PRPVTREGCK AMIRLAARDG GKWVVTKFVR EHSHKLMAHC KFPGELPTVN 180 MLSEEEKDKK IQDLYNELHR ERARSAAFQQ QLHMILKDLE EHAEFMSIRV EDIVDSLKRV 240 ELDDSSFN

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX622788	4e-54	JX622788.1 Gossypium hirsutum clone NBRI_GE69666 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017648306.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A0B0N4Q1	0.0	A0A0B0N4Q1_GOSAR; Far1-related sequence 5-like protein
STRING	Gorai.011G142100.1	1e-177	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16776	8	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-42	FAR1 family protein