PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_21153_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 221aa MW: 25352.6 Da PI: 6.7163 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 60.9 | 4e-19 | 60 | 143 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 fY++YA++vGF +r+ +s+ks+ +g +r + C + +++ + +++ ++r +C a+++++++k+g+w+++k++ + Cotton_A_21153_BGI-A2_v1.0 60 FYDDYARHVGFLTRVLSSHKSECDGLLFSRGLGCRGYHDGQTKVE-----LQKQDKQRESCSAMIHLRRDKNGRWVIKKFVRD 137 9*********************************87666655554.....5889999************************** PP FAR1 85 HnHela 90 HnH+l+ Cotton_A_21153_BGI-A2_v1.0 138 HNHPLV 143 ****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-16 | 60 | 143 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MSCFGFYLTN LCASVGEQVD DVDGRLEVST VDESNVHDYD TIQEPYVGMI FESEGAAKTF 60 YDDYARHVGF LTRVLSSHKS ECDGLLFSRG LGCRGYHDGQ TKVELQKQDK QRESCSAMIH 120 LRRDKNGRWV IKKFVRDHNH PLVIQLGESR RTLDEEKDNK IQELTAELRV KKRLSASYRE 180 LLLAVVKEVE DHNNNLSMKV QRTLDNLKKL DAEAKELLSG R |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017647397.1 | 1e-150 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A0B0MRJ8 | 1e-148 | A0A0B0MRJ8_GOSAR; Far1-related sequence 5-like protein | ||||
TrEMBL | A0A2P5WLE7 | 1e-148 | A0A2P5WLE7_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G142000.1 | 1e-140 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22264 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-52 | FAR1 family protein |