PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_21152_BGI-A2_v1.0 | ||||||||
Common Name | F383_06971 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 241aa MW: 28383.9 Da PI: 7.0197 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86.3 | 4.6e-27 | 75 | 166 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 +fY+ Y++++GF++r++++++s ++++i+ r+fvCskeg+r+e+ kk +++ ++r+ tr gC+a+l++ ++ gkw+++ ++ Cotton_A_21152_BGI-A2_v1.0 75 EFYEMYGRHMGFTIRNNRTRRSLKDNSIIGREFVCSKEGFRAEKYKKkETRVFTSRPATREGCNAMLRIAAKDGGKWVIYGFV 157 6******************************************9988233344599*************************** PP FAR1 83 leHnHelap 91 +eHnH l+p Cotton_A_21152_BGI-A2_v1.0 158 KEHNHVLNP 166 *****9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.5E-24 | 75 | 166 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MASTSNPELN TSRNYRQWLT ETFDGHEMLD DELSDSNLDG NGNLINPLDQ HFPMTMEHRE 60 PYIGMEFESA EDAREFYEMY GRHMGFTIRN NRTRRSLKDN SIIGREFVCS KEGFRAEKYK 120 KKETRVFTSR PATREGCNAM LRIAAKDGGK WVIYGFVKEH NHVLNPSKVP PRRSHRIAFC 180 EDEKDLKIRE LSTELHREKK KSAAYQEQLQ MVLNYIEEHT QRLSLKVNLV SNNLRELEYE 240 D |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017647423.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_017647424.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A0B0PJW4 | 1e-180 | A0A0B0PJW4_GOSAR; Far1-related sequence 5-like protein | ||||
TrEMBL | A0A2P5YIA9 | 1e-180 | A0A2P5YIA9_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G141900.1 | 1e-178 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18086 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-44 | FAR1 family protein |