PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21109_BGI-A2_v1.0
Common NameF383_34712
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 672aa    MW: 74447.4 Da    PI: 4.3965
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21109_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.8e-10517560146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 r rW++++ el++ a++q+G++ +++I + ++ gR++ q+k+++ +
  Cotton_A_21109_BGI-A2_v1.0 517 RARWSKQDTELFYGAIRQFGPD-FSLIQQLFP-GRSRHQIKLKFKN 560
                                 569*****************88.*********.**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.5E-25513592No hitNo description
PROSITE profilePS5129310.632515566IPR017884SANT domain
Gene3DG3DSA:1.10.10.603.0E-6515561IPR009057Homeodomain-like
SMARTSM007171.3E-8516564IPR001005SANT/Myb domain
CDDcd001678.01E-7519560No hitNo description
SuperFamilySSF466894.79E-10519568IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MEESDFFQDE PVVTQARAGA KFQPKFKRKA KDGASGSIPS KPPVILKDEA TTVASTAINA  60
VQVVEPDNVV YGSKGSQLIN PSQVTVTDSL LAEAAVSNCC NDTNSSFERT VGENADLYFG  120
LECLDPLLTQ SSTNDGDNRT DHERTRTEEA GVFPDVDTQD IMFGMTTASG RRTGKFKPKP  180
RLQTSVPASP PTVVEWVMHP ATAQFVPSET AFEEGSIPDF PSDHVPNCAP VDLGSFIPPD  240
PSTSECPVNE ELANLAVASN AGVDLSGDVP DMPTEVSSLV SNPSRESKQS STGGEVNGKS  300
EARKQLREQV TTPHIVDDLE DGTCNDDGLA AELPSCYAID EDKDDNDDDE FNVEHASPKR  360
RTSKRSKKPV KESEKPPRKR KKANEAQEHK KANEASDNPE KEQRKKFSHS TRRKRRFVDE  420
SLLTTPEDEI DFAKVALKDL ILLADYKERI AKKEAKALKE PLTDQSTQKR LNEENAHDEE  480
SSIASEQDQG IMDDQVNGSA QSDIYFNYQT LMTKEPRARW SKQDTELFYG AIRQFGPDFS  540
LIQQLFPGRS RHQIKLKFKN EERRSPFKIS EALASRASDH SYFAKVIEQL QQVSGADPEA  600
HGDVSNDLTR EEEEVTPENN EEAAKSKQDE DVSVGDQEAD ITQDHSSLKS NEMDDEDEDD  660
DDEILNSYQS AF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358380KRRTSKRSKKPVKESEKPPRKRK
2359365RRTSKRS
3374380KPPRKRK
4377381RKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017612088.10.0PREDICTED: transcription factor TFIIIB component B'' homolog
TrEMBLA0A0B0N2G50.0A0A0B0N2G5_GOSAR; Transcription factor TFIIIB component B
STRINGGorai.006G107300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-38MYB_related family protein