PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21107_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 271aa    MW: 29357.7 Da    PI: 10.3587
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21107_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35e-20131180255
                         AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                  y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++ a+++l+g
  Cotton_A_21107_BGI-A2_v1.0 131 SYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDTAARRLRG 180
                                 69*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.59E-30130189No hitNo description
PROSITE profilePS5103222.853131188IPR001471AP2/ERF domain
PfamPF008471.2E-13131180IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-21131188IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-29131188IPR001471AP2/ERF domain
SMARTSM003801.2E-32131194IPR001471AP2/ERF domain
PRINTSPR003671.1E-10132143IPR001471AP2/ERF domain
PRINTSPR003671.1E-10154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MQSPATDSTL KASETTETPC LYNLIACSSH SSTIASTQFY RRSYPPIYTK FSDSGNGIGT  60
YLETQPVLDG IAAVVGQHVL FGTKTNPTTS NSQGDGDRAS TVETSSFVSA SHRFGSNKRN  120
VNAAAASMQK SYRGVRKRPW GRWSAEIRDR IGRCRHWLGT FDTAEEAARA YDTAARRLRG  180
SKAKTNFEIP SALPLPSRCS TSSSSTEAKK KVKSKGNKTQ RKCAVVTSVA HLFSSGGNEG  240
KGSEELELKL GMGLNNKPSM PSNDVRSVNH Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-17130189161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A6e-171321871571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609636.10.0PREDICTED: ethylene-responsive transcription factor ERF084-like
TrEMBLA0A2P5X4780.0A0A2P5X478_GOSBA; Uncharacterized protein
STRINGGorai.006G107500.11e-142(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.17e-24ERF family protein