PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21002_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 398aa    MW: 45338.6 Da    PI: 7.1302
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21002_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.11.7e-49321572128
                         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWk
  Cotton_A_21002_BGI-A2_v1.0  32 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWK 113
                                 79***************************.89***************888889****************************** PP

                         NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 atg d+ +  ++++ +glkktLvfy+g+apkg +++W+m+eyrl
  Cotton_A_21002_BGI-A2_v1.0 114 ATGADRMIRGENSRSIGLKKTLVFYSGKAPKGIRSSWIMNEYRL 157
                                 ******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.40831178IPR003441NAC domain
SuperFamilySSF1019418.37E-5631177IPR003441NAC domain
PfamPF023651.1E-2433157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSNDNTSNVD LDFNNSNSSS SSKDDHEQDM VMPGFRFHPT EEELVEFYLR RKVEGKRFNV  60
ELITFLDLYR YDPWELPAMA AIGEKEWFFY VPRDRKYRNG DRPNRVTTSG YWKATGADRM  120
IRGENSRSIG LKKTLVFYSG KAPKGIRSSW IMNEYRLPHH ETERYQKAEI SLCRVYKRAG  180
VEDHPSLPRC LPTRALTSSR GLQSEKKYSQ AQDAAQQAME RFQGFGGGQS QPQLEIEKIS  240
ETDGSSSSTS DVTTALALSK QNVYRPTALI RTTLGLPSGI MEEEGLFLNQ SKQGCTSLLP  300
NSTTLFQLGS SSVSSNVVDD LHRLVSYQQA TMNPLQFYNT YQQQQQQPEF STLPPQSQAQ  360
QLSLNVLPSS LPLTTFSDRL WEWSPIPEPS REFTNPFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-543317819165NO APICAL MERISTEM PROTEIN
1ut4_B4e-543317819165NO APICAL MERISTEM PROTEIN
1ut7_A4e-543317819165NO APICAL MERISTEM PROTEIN
1ut7_B4e-543317819165NO APICAL MERISTEM PROTEIN
3swm_A5e-543317822168NAC domain-containing protein 19
3swm_B5e-543317822168NAC domain-containing protein 19
3swm_C5e-543317822168NAC domain-containing protein 19
3swm_D5e-543317822168NAC domain-containing protein 19
3swp_A5e-543317822168NAC domain-containing protein 19
3swp_B5e-543317822168NAC domain-containing protein 19
3swp_C5e-543317822168NAC domain-containing protein 19
3swp_D5e-543317822168NAC domain-containing protein 19
4dul_A4e-543317819165NAC domain-containing protein 19
4dul_B4e-543317819165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472430.0KC847243.1 Gossypium hirsutum NAC domain protein NAC66 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644975.10.0PREDICTED: NAC domain-containing protein 35-like
SwissprotQ9ZVP81e-120NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A1U8MJN50.0A0A1U8MJN5_GOSHI; protein ATAF2-like
STRINGGorai.010G142400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54362750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-114NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]