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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Cotton_A_20674_BGI-A2_v1.0 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | LBD | ||||||||
| Protein Properties | Length: 216aa MW: 23385 Da PI: 6.0602 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 124.7 | 4.6e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82
+C aCk+lrr+C+k+Cv+apyf +eq + +fa++hk+FGasnv+kll++lp +er +a+ ++ yeA+ar++dP+yG+v++i++
Cotton_A_20674_BGI-A2_v1.0 7 PCGACKFLRRRCVKGCVFAPYFSHEQgATHFAAIHKVFGASNVSKLLTHLPVNERCEAAVTISYEAQARLQDPIYGCVSHIFA 89
7*************************89******************************************************* PP
DUF260 83 lqqqleqlkaelallkee 100
lqqq+ +l+a+la lke+
Cotton_A_20674_BGI-A2_v1.0 90 LQQQVVNLQAQLACLKEQ 107
*************99987 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50891 | 22.319 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
| Pfam | PF03195 | 1.3E-37 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 216 aa Download sequence Send to blast |
MTGAGSPCGA CKFLRRRCVK GCVFAPYFSH EQGATHFAAI HKVFGASNVS KLLTHLPVNE 60 RCEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVVNLQAQ LACLKEQAAS STFINGTSGS 120 GNPNNVLLQS WFHNNSTMAA PNLNPNLSEN GFLDPNSLVN YESSSVISSS SGEDRSSFNA 180 FGEAVPCSMA SFEEQWSNFQ DVDDFQSMAF GFVHHS |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5ly0_A | 4e-37 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
| 5ly0_B | 4e-37 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
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| Source | Description | |||||
| UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
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| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_017624613.1 | 1e-160 | PREDICTED: LOB domain-containing protein 29-like | ||||
| Swissprot | Q9M2J7 | 1e-66 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
| TrEMBL | A0A2P5XCI5 | 1e-159 | A0A2P5XCI5_GOSBA; Uncharacterized protein | ||||
| STRING | Gorai.004G220000.1 | 1e-158 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM108 | 28 | 359 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G58190.1 | 2e-57 | lateral organ boundaries-domain 29 | ||||
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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