PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_20664_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 214aa    MW: 24362.2 Da    PI: 4.936
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_20664_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-1876125355
                         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 y+GVr ++ +g+++AeIrd + ng   r+++g+f++aeeAa a+++a+ +++g
  Cotton_A_20664_BGI-A2_v1.0  76 YRGVRKRP-WGKYAAEIRDSTRNG--VRVWIGTFDSAEEAALAYDQAAFAMKG 125
                                 9*******.**********44465..************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-1375125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2975134IPR001471AP2/ERF domain
SMARTSM003802.8E-3575139IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-2275135IPR016177DNA-binding domain
PROSITE profilePS5103222.20775133IPR001471AP2/ERF domain
CDDcd000183.62E-2975133No hitNo description
PRINTSPR003671.9E-107687IPR001471AP2/ERF domain
PRINTSPR003671.9E-1099115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDESSFFQYS TTSEVSPESS FCSPEPYSSV FFNFNDAEEL LWMDLLAEGG RPKPEPEEVT  60
SEVKQPEPEP KGERNYRGVR KRPWGKYAAE IRDSTRNGVR VWIGTFDSAE EAALAYDQAA  120
FAMKGALATL NFPMEVVKES LEEMKYRCEE GCSPVVALKK RHYLRKRSSS SSSTVKNKRN  180
KRNEVVGQQQ QQQRNLVVFE DLGADYLEQL LSSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2774136466ATERF1
3gcc_A4e-2774136466ATERF1
5wx9_A6e-27761351574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6164780.0JX616478.1 Gossypium hirsutum clone NBRI_GE61184 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625672.11e-158PREDICTED: ethylene-responsive transcription factor 15-like
SwissprotA0A3Q7I5Y93e-64ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A1U8LLM01e-155A0A1U8LLM0_GOSHI; ethylene-responsive transcription factor 15-like
STRINGGorai.004G220800.11e-143(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22752876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-40ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]