PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_20645_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 255aa    MW: 29534.3 Da    PI: 8.4825
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_20645_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.1e-121461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                rg WT eEd +l + +   G  +W+++++  g+ R++k+c++rw +yl
  Cotton_A_20645_BGI-A2_v1.0 14 RGQWTIEEDHKLTNFILNNGIICWRKVPKLAGLLRCGKSCRLRWINYL 61
                                89******************************99************97 PP
2Myb_DNA-binding51.32.6e-1667110146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 rg++T  E+ ++++++ +l ++ W++Ia++++ gRt++++k++w++
  Cotton_A_20645_BGI-A2_v1.0  67 RGSFTDSEEHQIIQLHSRLRNR-WSKIASHFP-GRTDNEIKNHWNT 110
                                 899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-19564IPR009057Homeodomain-like
PROSITE profilePS5129412.829961IPR017930Myb domain
SuperFamilySSF466892.02E-2511108IPR009057Homeodomain-like
SMARTSM007171.3E-61363IPR001005SANT/Myb domain
PfamPF002491.4E-101461IPR001005SANT/Myb domain
CDDcd001678.29E-51761No hitNo description
PROSITE profilePS5129425.18762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.5E-2565117IPR009057Homeodomain-like
SMARTSM007174.7E-1466114IPR001005SANT/Myb domain
PfamPF002494.8E-1567110IPR001005SANT/Myb domain
CDDcd001674.86E-969110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGQWTIE EDHKLTNFIL NNGIICWRKV PKLAGLLRCG KSCRLRWINY  60
LRPGLKRGSF TDSEEHQIIQ LHSRLRNRWS KIASHFPGRT DNEIKNHWNT RIKKKLKQLG  120
LDSQKPFEIE KSRKNYGNKN NMNSDSSSSN KQEAISLESR PEDDHGMKIC PKKAERPEEM  180
KATVDETNDP LNNYQMLSGS SDLDWLKESN NVSMGETACV EEEYWVDGVD SFLSWNSFVH  240
VEDKFFPSWE IGNGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628736.10.0PREDICTED: myb-related protein 315-like
SwissprotQ9C7U79e-66MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A1U8L4910.0A0A1U8L491_GOSHI; myb-related protein 315-like
STRINGGorai.007G074500.11e-170(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.14e-74myb domain protein 40
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]