PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_20634_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 163aa MW: 18277.7 Da PI: 7.4412 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.6 | 1.1e-43 | 11 | 109 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +CaaCk+lrrkC +dCv+apyfp e+p+kf nvhk+FGasnv+kl++++ +++reda++sl+yeAear++dPvyG+vg i+ l Cotton_A_20634_BGI-A2_v1.0 11 PCAACKFLRRKCMPDCVFAPYFPPEEPQKFINVHKIFGASNVSKLINEVAPHQREDAVNSLAYEAEARLKDPVYGCVGAISIL 93 7********************************************************************************** PP DUF260 84 qqqleqlkaelallke 99 q+q+ +l+ el+++++ Cotton_A_20634_BGI-A2_v1.0 94 QRQVFRLQRELDAIHA 109 ***********99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.012 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.3E-43 | 11 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MASSSHSSNF PCAACKFLRR KCMPDCVFAP YFPPEEPQKF INVHKIFGAS NVSKLINEVA 60 PHQREDAVNS LAYEAEARLK DPVYGCVGAI SILQRQVFRL QRELDAIHAD LIRYATATCN 120 CNEMPPPMGR TSFHHNSSCN IYYPNPHWNE PYEGNGRSDG GSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-64 | 2 | 124 | 2 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-64 | 2 | 124 | 2 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017628732.1 | 1e-121 | PREDICTED: LOB domain-containing protein 25 | ||||
Swissprot | Q9FML4 | 1e-65 | LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | A0A1U8L440 | 1e-117 | A0A1U8L440_GOSHI; LOB domain-containing protein 25-like | ||||
TrEMBL | A0A2P5XGR5 | 1e-117 | A0A2P5XGR5_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G075700.1 | 1e-116 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 6e-68 | LBD family protein |
Publications ? help Back to Top | |||
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