PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_20528_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 211aa    MW: 22963.2 Da    PI: 4.9369
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_20528_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.61.9e-42431421100
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                 +CaaCk+lrr+Ca++Cvlapyfp ++p+kfa++h++FGasn++k+l++lpe +r+da+ss+vyeA ar+rdPvyG++g +++l
  Cotton_A_20528_BGI-A2_v1.0  43 PCAACKILRRRCADKCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPECQRSDAVSSMVYEAGARIRDPVYGCAGAVFQL 125
                                 7********************************************************************************** PP

                      DUF260  84 qqqleqlkaelallkee 100
                                 q+q+++l+a+la+++++
  Cotton_A_20528_BGI-A2_v1.0 126 QKQVNELQAQLAKAQAQ 142
                                 *************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.83242143IPR004883Lateral organ boundaries, LOB
PfamPF031954.0E-4243140IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEYSEPIPTP TISSSPSLSP NSSISSNSPR SPPLSPPPVV ISPCAACKIL RRRCADKCVL  60
APYFPPTEPA KFAIAHRVFG ASNIIKFLQE LPECQRSDAV SSMVYEAGAR IRDPVYGCAG  120
AVFQLQKQVN ELQAQLAKAQ AQVVNMQFQQ ANVLALLCMD MDKDKAPSSP PPNSPQSAVD  180
DTFITNSSYL SFMEDINNDT NLGSLWEPLW T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-41381456113LOB family transfactor Ramosa2.1
5ly0_B4e-41381456113LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6169072e-49JX616907.1 Gossypium hirsutum clone NBRI_GE61864 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017619062.11e-153PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR02e-76LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A2P5XGG61e-151A0A2P5XGG6_GOSBA; Uncharacterized protein
STRINGGorai.013G002900.11e-105(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-66LOB domain-containing protein 1