PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_20473_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 838aa    MW: 92425.7 Da    PI: 6.182
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_20473_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.7e-191977357
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Cotton_A_20473_BGI-A2_v1.0 19 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
                                5679*****************************************************97 PP
2START181.35.5e-571633712205
                                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEE CS
                       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlev 84 
                                 +aee+++e+++ka+ +   Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++++++++v
  Cotton_A_20473_BGI-A2_v1.0 163 IAEETLTEFLSKATRTVVEWVQMPGMKPGPDSIGIVAISHGRSGVAARACGLVGLDPT-RVAEILKDRPSWYRDCRAVDVINV 244
                                 68999*****************************************************.8888888888************** PP

                                 ECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCE CS
                       START  85 issg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksngh 161
                                 +s+g  g+++l +++l+a+++l+p Rdf+ +Ry+  +++g++v++++S++++q+ p+    +++vRaellpSg+li+p+++g+
  Cotton_A_20473_BGI-A2_v1.0 245 LSTGngGTIELLYMQLYAPTTLAPaRDFWLLRYTSVMEDGSLVVCERSLNNTQNGPSmppAANFVRAELLPSGYLIRPCEGGG 327
                                 *******************************************************99999*********************** PP

                                 EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                       START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                                 s +++v+h+dl+ ++++++lr+l++s++  ++kt++a+l+++++
  Cotton_A_20473_BGI-A2_v1.0 328 SIIHIVDHMDLEPWSVPEVLRPLYESSTLLAQKTTMAALRHLRQ 371
                                 ***************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.8721478IPR001356Homeobox domain
SMARTSM003895.3E-161682IPR001356Homeobox domain
CDDcd000865.63E-171979No hitNo description
SuperFamilySSF466895.56E-171982IPR009057Homeodomain-like
PfamPF000461.1E-162077IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.9E-192177IPR009057Homeodomain-like
CDDcd146861.14E-671110No hitNo description
PROSITE profilePS5084826.245153381IPR002913START domain
CDDcd088752.95E-78159372No hitNo description
SMARTSM002341.9E-41162372IPR002913START domain
PfamPF018522.7E-54163371IPR002913START domain
SuperFamilySSF559612.61E-37163374No hitNo description
Gene3DG3DSA:3.30.530.209.7E-24164368IPR023393START-like domain
PfamPF086702.3E-51697837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010067Biological Processprocambium histogenesis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010089Biological Processxylem development
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MAVTSSCKEG TKIAMDNGKY VRYTPEQVEA LERLYHECPK PSSMRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE ASRLQAVNRK LTAMNKLLME ENDRLQKQVS QLVYENSYFR  120
QQTQNTTLAT TDTSCESVVT SGQHHLTPQH PPRDASPTGL LYIAEETLTE FLSKATRTVV  180
EWVQMPGMKP GPDSIGIVAI SHGRSGVAAR ACGLVGLDPT RVAEILKDRP SWYRDCRAVD  240
VINVLSTGNG GTIELLYMQL YAPTTLAPAR DFWLLRYTSV MEDGSLVVCE RSLNNTQNGP  300
SMPPAANFVR AELLPSGYLI RPCEGGGSII HIVDHMDLEP WSVPEVLRPL YESSTLLAQK  360
TTMAALRHLR QISQEISQPN VTGWGRRPAA LRALSQKLSK GFNEAVNGFA DEGWSMLESD  420
GVDDVTLLVN SSPSKMMGIN LSYGNGFPSM GNAILCAKAS MLLQNVPPAI LLRFLREHRS  480
EWADSGIDAY SAAAVKAGPC GLPVARGGSF GGQVILPLAH TIEHEEFMEV IKLENMGHYR  540
EDMIMPGDIF LLQLCSGVDE NAVGTCAELI FAPIDASFSD DAPIIPSGFR IIPLDSGMDA  600
SSPNRTLDLA STLEVGAAGN RSTGDNSGRN GSTKSVMTIA FQFVYEIHLQ ENVATMARQY  660
VRSIIASVQR VALALSPSNF GSHAGFRTPP GTPEAQTLAR WICQSYRCYL GVELLEYEGS  720
ESILKTLWHH TDAVLCCSLK ALPVFTFANQ AGLDMLETTL VALQDISLEK IFDDNGRKAL  780
FAEFPQVMQQ GFMCLQGGIC LSSMGRPISY ERAVAWKVVN DEENAHCICF MFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614652.10.0PREDICTED: homeobox-leucine zipper protein ATHB-8-like
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A1U8N0W40.0A0A1U8N0W4_GOSHI; homeobox-leucine zipper protein ATHB-8-like isoform X1
STRINGGorai.009G049100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20222678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]