PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_20373_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 316aa MW: 35041.2 Da PI: 7.0724 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.5 | 2e-17 | 174 | 228 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rq+ vWFqNrRa+ k Cotton_A_20373_BGI-A2_v1.0 174 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQIEVWFQNRRARTK 228 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 126.2 | 1.4e-40 | 174 | 264 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prq++vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke Cotton_A_20373_BGI-A2_v1.0 174 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQIEVWFQNRRARTKLKQTEVDCEYLKRCCETLAEENKRLQKE 256 69********************************************************************************* PP HD-ZIP_I/II 84 veeLreelk 92 +eLr +lk Cotton_A_20373_BGI-A2_v1.0 257 LQELR-ALK 264 ****9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 1.8E-8 | 46 | 138 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 3.7E-17 | 157 | 224 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.119 | 170 | 230 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.6E-18 | 171 | 239 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.2E-15 | 172 | 234 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.4E-15 | 174 | 228 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.96E-16 | 174 | 231 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 205 | 228 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 7.8E-25 | 230 | 273 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.5E-10 | 230 | 264 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MELALSLGDP SKPFSFLDKT AKLSSKDLGF CMGLGNGFKS QENGDDAFEG KNSTDGDEKR 60 VSSDPPLQLD LLPFSPVPRP QSSSQLRLPW LTDNQTDPWE GLGRGLDVNR LPLVAVADEA 120 EEKAAVSSPN SAVSMDFGIR NGSRRGKKEV EVEAVETERT STRASDDEDN GSTRKKLRLS 180 KEQSAFLEES FKEHSTLNPK QKLALAKQLN LRPRQIEVWF QNRRARTKLK QTEVDCEYLK 240 RCCETLAEEN KRLQKELQEL RALKTSQPFY MQLPATTLTM CPSCERVATA STTNASASTA 300 NAKTGGYTFF SSTSNT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 178 | TRKKLRL |
2 | 222 | 230 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017614209.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT14-like | ||||
Swissprot | P46665 | 7e-98 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A1U8NKH0 | 0.0 | A0A1U8NKH0_GOSHI; homeobox-leucine zipper protein HAT14-like | ||||
STRING | Gorai.012G100100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4928 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-73 | homeobox from Arabidopsis thaliana |