PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_20271_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YC

Protein Properties

Length: 302aa MW: 33053.7 Da PI: 5.9426

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_20271_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.2	8.8e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl +iv r Cotton_A_20271_BGI-A2_v1.0 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYKITLQRGAKTMNSLHLKHCVQSYNVFDFLREIVSR 86 5789*************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.9E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	2.92E-20	4	90	IPR009072	Histone-fold
Pfam	PF00808	8.2E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YKITLQRGAK 60 TMNSLHLKHC VQSYNVFDFL REIVSRVPDY GHGHGHGHSD AVAAAADDDR SISRRRKAAG 120 DEVHVSDEES KRSRIHDVGH VGTIGRGRGR GRGRGRGRGG RNVERDAHRE IEPEPCATLQ 180 QNSKSHPTPG MVVDDGSESK EPIKENTIAE DANQAVRNFD LNAEVDENVE AKPTVGAATA 240 AAPEPAAAAA QPSSAEPITG TKHEEYPGWS LSDMDKMAID PLQLAQLGKR LDEDEEDYDE 300 EG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-20	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	157	RGRGRGRGRGR
2	149	158	RGRGRGRGRG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964448	1e-126	JX964448.1 Gossypium hirsutum clone NBRI_TRANS-717 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017616042.1	0.0	PREDICTED: dr1-associated corepressor homolog isoform X2
TrEMBL	A0A0D2TH63	1e-164	A0A0D2TH63_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8LL52	1e-164	A0A1U8LL52_GOSHI; dr1-associated corepressor homolog
STRING	Gorai.012G022300.1	1e-165	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3506	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-62	nuclear factor Y, subunit C11