PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_20149_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 122aa    MW: 13391.6 Da    PI: 6.4666
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_20149_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.93.2e-06446541
                    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                                 C+++e   ++  C  ++  lC +C ++ H        H++ p
  Cotton_A_20149_BGI-A2_v1.0  4 QCNLCEAAVAKVLCCADEAALCLECDEKVHAAnklvseHQRLP 46
                                7*****************************6678888888776 PP
2zf-B_box25.23.3e-085487235
                    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35
                                +++kC+ ++e    +fC +++ llC++C +++H 
  Cotton_A_20149_BGI-A2_v1.0 54 QMPKCDICQEISGFFFCLQDRALLCRKCDVAIHT 87
                                789*******889*******************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.196147IPR000315B-box-type zinc finger
CDDcd000213.27E-5347No hitNo description
SMARTSM003369.6E-8447IPR000315B-box-type zinc finger
SMARTSM003369.1E-1253100IPR000315B-box-type zinc finger
PfamPF006431.2E-55487IPR000315B-box-type zinc finger
CDDcd000213.82E-55687No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MRIQCNLCEA AVAKVLCCAD EAALCLECDE KVHAANKLVS EHQRLPLFSS SSFQMPKCDI  60
CQEISGFFFC LQDRALLCRK CDVAIHTVNS VVSCHQRFLL TGVEVDVGTK TDTIGASCFN  120
AK
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5902581e-100JX590258.1 Gossypium hirsutum clone NBRI_GE25138 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477061.13e-84PREDICTED: B-box zinc finger protein 22-like
RefseqXP_016690944.13e-84PREDICTED: B-box zinc finger protein 22-like
RefseqXP_017625877.13e-84PREDICTED: B-box zinc finger protein 22-like
SwissprotQ9SYM29e-55BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A0D2R5197e-83A0A0D2R519_GOSRA; Uncharacterized protein
TrEMBLA0A1U8JRL07e-83A0A1U8JRL0_GOSHI; B-box zinc finger protein 22-like
TrEMBLA0A2P5WF997e-83A0A2P5WF99_GOSBA; Uncharacterized protein
STRINGGorai.004G271600.11e-83(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125022430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.16e-43light-regulated zinc finger protein 1