PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19990_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 273aa    MW: 30231.5 Da    PI: 6.7875
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19990_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-173887255
                         AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                ++ GVr+++ +grWvAeI+       ++ r +lg+f taeeAa+a+++a+  l+g
  Cotton_A_19990_BGI-A2_v1.0 38 KFVGVRQRP-SGRWVAEIKNtT----HKIRMWLGTFETAEEAARAYDEAACLLHG 87
                                799******.7******99922....34**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-3438101IPR001471AP2/ERF domain
PROSITE profilePS5103219.3883895IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-273895IPR001471AP2/ERF domain
PfamPF008477.1E-133887IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-193895IPR016177DNA-binding domain
CDDcd000189.84E-313894No hitNo description
PRINTSPR003679.2E-83950IPR001471AP2/ERF domain
PRINTSPR003679.2E-86177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEIQSQQQSQ LKLQPKPSNP SVSKGSKFKG RNNNKVNKFV GVRQRPSGRW VAEIKNTTHK  60
IRMWLGTFET AEEAARAYDE AACLLHGSNT RTNFITQAPS DSPLACRIRN LLNSKKGGEQ  120
QHHQSVVVSA APSTSATISF SPMPSPSTSS SGCSSNGGLS NGNLSVSGRV QDTQLFDDAY  180
KPDMRSWRRE SGFDSDFTYT SSELGFDRFL YTQETTGLPE ETGSELTEFQ SMKVERQISA  240
SLHAMNGVEE YMETVHDSSE NLWDLPPLCS LLY
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017647905.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
SwissprotA0A1X9PY882e-88ERN1_LOTJA; Ethylene-responsive transcription factor ERN1
TrEMBLA0A1U8IBF10.0A0A1U8IBF1_GOSHI; ethylene-responsive transcription factor RAP2-11-like
STRINGGorai.013G115000.11e-180(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16007712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.18e-27related to AP2 11
Publications ? help Back to Top
  1. Yano K, et al.
    Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads.
    DNA Res., 2017. 24(2): p. 193-203
    [PMID:28028038]
  2. Kawaharada Y,James EK,Kelly S,Sandal N,Stougaard J
    The Ethylene Responsive Factor Required for Nodulation 1 (ERN1) Transcription Factor Is Required for Infection-Thread Formation in Lotus japonicus.
    Mol. Plant Microbe Interact., 2017. 30(3): p. 194-204
    [PMID:28068194]
  3. Cerri MR, et al.
    The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus.
    New Phytol., 2017. 215(1): p. 323-337
    [PMID:28503742]