PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_19984_BGI-A2_v1.0

Common Name

F383_08328

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 921aa MW: 100941 Da PI: 6.659

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_19984_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.3	1.4e-18	325	424	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+ Cotton_A_19984_BGI-A2_v1.0 325 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCMQSMQLQAGDT 406 99************************555567778***********99899999999.************* PP EEEEE-SSSEE..EEEEE- CS B3 80 vvFkldgrsefelvvkvfr 98 v+F++++ e++lv+++++ Cotton_A_19984_BGI-A2_v1.0 407 VTFSRMD-PEGKLVMGFRK 424 **876.77777877776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.50.10	3.1E-4	3	42	IPR013088	Zinc finger, NHR/GATA-type
Gene3D	G3DSA:2.40.330.10	3.1E-30	318	434	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.98E-20	322	425	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.62E-22	323	424	No hit	No description
PROSITE profile	PS50863	11.011	325	426	IPR003340	B3 DNA binding domain
SMART	SM01019	7.0E-20	325	425	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.3E-16	325	424	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.559	590	640	IPR011124	Zinc finger, CW-type
Pfam	PF07496	5.2E-13	595	637	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010030	Biological Process	positive regulation of seed germination
GO:2000034	Biological Process	regulation of seed maturation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 921 aa Download sequence Send to blast
MASKSCMNGL CGATTSIEWR KGWALRSGDF ANLCDKCGSA YEQSIFCDIF HSKDAGWREC 60 SSCGKRLHCG CIVSRCLLEL LDSGGGIICI SCAKKSGLNP MIEDEKPNGF GIVKTNAGQL 120 HSISADNQLI SISNENLKLM QLSNNAESIG LRQLLQLHND DSSRSFVQMK QEEVLPPAID 180 IGSTCLSNTN QASNGSVQAG KPAICKANIS ETLPQTNLSI SLGSSLGNQN VFPGSVVDEK 240 GKMSSVLQQA SKSLHLLPKP PKPVLAGLEV NAGMVPQIRV ARPPVEGRGR NQLLPRYWPR 300 ITDQELQQIS GEYPPFSNST IVPLFEKVLS ASDAGRIGRL VLPKACAEAY FPPISQPEGL 360 PLRIQDVKGK EWVFQFRFWP NNNSRMYVLE GVTPCMQSMQ LQAGDTVTFS RMDPEGKLVM 420 GFRKATNNAA VQETLPSAIP NGTLSSESLF SGVFENLPII SGYSGLLQSL KGSTDPHLNA 480 LSKHLSSTGG DISWNKSGKH EDRIREGLLL PSMLTPERKR TRNIGSKSKR LLIDSQDALE 540 LKLTWEEAQD LLRPPPSIKP SVVTIEDHDF EEYDEPPVFG KRSIFAVRST GGQEQWAQCD 600 SCSKWRRLPV DVLLPPKWTC ADNNWDQSRS SCSAPEELTP RELENLLRLN RDFKKRRIAA 660 FTRPTQEHES SSGLDALANA AILGDNADNS GTTSVATTTK HPRHRPGCSC IVCIQPPSGK 720 GKHKPTCTCV VCMTVKRRFK TLTMRKKKRQ SEREAEIAQR NQQAWGPSEE AEVDSSSKHV 780 SSLHLNPFEN EARSANELES KSQSSTKLVE ANKGQIDLNC DPDREDDSQL GPNRTSMTSL 840 VRVASLPLET YLKENGLTSL VYEQQGNSAS NAPPQSMSGT VEGETQENSS FPSATEEPES 900 KDEENGETGS DRVDDNNDKD P

Sequence ? help Back to Top

Protein Sequence Length: 921 aa Download sequence Send to blast

MASKSCMNGL CGATTSIEWR KGWALRSGDF ANLCDKCGSA YEQSIFCDIF HSKDAGWREC  60
SSCGKRLHCG CIVSRCLLEL LDSGGGIICI SCAKKSGLNP MIEDEKPNGF GIVKTNAGQL  120
HSISADNQLI SISNENLKLM QLSNNAESIG LRQLLQLHND DSSRSFVQMK QEEVLPPAID  180
IGSTCLSNTN QASNGSVQAG KPAICKANIS ETLPQTNLSI SLGSSLGNQN VFPGSVVDEK  240
GKMSSVLQQA SKSLHLLPKP PKPVLAGLEV NAGMVPQIRV ARPPVEGRGR NQLLPRYWPR  300
ITDQELQQIS GEYPPFSNST IVPLFEKVLS ASDAGRIGRL VLPKACAEAY FPPISQPEGL  360
PLRIQDVKGK EWVFQFRFWP NNNSRMYVLE GVTPCMQSMQ LQAGDTVTFS RMDPEGKLVM  420
GFRKATNNAA VQETLPSAIP NGTLSSESLF SGVFENLPII SGYSGLLQSL KGSTDPHLNA  480
LSKHLSSTGG DISWNKSGKH EDRIREGLLL PSMLTPERKR TRNIGSKSKR LLIDSQDALE  540
LKLTWEEAQD LLRPPPSIKP SVVTIEDHDF EEYDEPPVFG KRSIFAVRST GGQEQWAQCD  600
SCSKWRRLPV DVLLPPKWTC ADNNWDQSRS SCSAPEELTP RELENLLRLN RDFKKRRIAA  660
FTRPTQEHES SSGLDALANA AILGDNADNS GTTSVATTTK HPRHRPGCSC IVCIQPPSGK  720
GKHKPTCTCV VCMTVKRRFK TLTMRKKKRQ SEREAEIAQR NQQAWGPSEE AEVDSSSKHV  780
SSLHLNPFEN EARSANELES KSQSSTKLVE ANKGQIDLNC DPDREDDSQL GPNRTSMTSL  840
VRVASLPLET YLKENGLTSL VYEQQGNSAS NAPPQSMSGT VEGETQENSS FPSATEEPES  900
KDEENGETGS DRVDDNNDKD P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	3e-66	299	432	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	735	746	KRRFKTLTMRKK
2	735	748	KRRFKTLTMRKKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269\|PubMed:17158584, ECO:0000269\|PubMed:17267611}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017648954.1	0.0	PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1
Refseq	XP_017648955.1	0.0	PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1
Swissprot	Q5CCK4	0.0	VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBL	A0A0B0PI96	0.0	A0A0B0PI96_GOSAR; B3 domain-containing transcription repressor VAL2-like protein
STRING	Gorai.011G127500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7203	26	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Publications ? help Back to Top
Jia H,McCarty DR,Suzuki M Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression. Plant Physiol., 2013. 163(3): p. 1293-305 [PMID:24043445] Chhun T, et al. HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth. Plant Cell Physiol., 2016. 57(8): p. 1689-706 [PMID:27335347] Yuan W, et al. A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis. Nat. Genet., 2016. 48(12): p. 1527-1534 [PMID:27819666] Li C,Cui Y A DNA element that remembers winter. Nat. Genet., 2016. 48(12): p. 1451-1452 [PMID:27898079]