PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_19889_BGI-A2_v1.0 | ||||||||
Common Name | F383_31781 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 256aa MW: 28865.4 Da PI: 6.5379 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.5 | 5.2e-21 | 91 | 140 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+G+r+++ +g+W+AeIrdp + r++lg++ taeeAa+a+++a+k+++ge Cotton_A_19889_BGI-A2_v1.0 91 YRGIRQRP-WGKWAAEIRDPH----KgVRVWLGTYNTAEEAARAYDEAAKRIRGE 140 9*******.**********72....35**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.73E-23 | 90 | 148 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.36E-34 | 90 | 149 | No hit | No description |
SMART | SM00380 | 1.6E-38 | 90 | 153 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-33 | 90 | 148 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.065 | 90 | 147 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 91 | 102 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.3E-15 | 91 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 113 | 129 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008219 | Biological Process | cell death | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051707 | Biological Process | response to other organism | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MCGGAIISDF IAVKRGRKLT AEDLWSELDT FSDLLGLDYG NGKDSSFTQF DNTKAGSKAK 60 NLEKVANETT QKTSRGREKE GKTQRTRKNI YRGIRQRPWG KWAAEIRDPH KGVRVWLGTY 120 NTAEEAARAY DEAAKRIRGE KAKLNFPQTP HLTQPPAKKR CMMAPELTPP SSETKSPPTP 180 QLFMGFGYEN GVYRPSEAME SEMELKEQIS SLESFLGLEP DETTTELSGS AEPDSVDLWM 240 LDDLVTHHQQ QPQLFY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-22 | 91 | 147 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-22 | 91 | 147 | 6 | 63 | ATERF1 |
3gcc_A | 3e-22 | 91 | 147 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00109 | PBM | Transfer from AT3G16770 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY962571 | 0.0 | AY962571.1 Gossypium hirsutum cultivar Xinhai14 putative ethylene responsive element binding protein 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017649944.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-3 | ||||
Swissprot | P42736 | 5e-64 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A0B0MUY4 | 0.0 | A0A0B0MUY4_GOSAR; Ethylene-responsive transcription factor RAP2-3-like protein | ||||
STRING | Gorai.011G193600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G16770.1 | 4e-55 | ethylene-responsive element binding protein |