PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_19871_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 354aa MW: 39460.4 Da PI: 5.6457 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEde+l++++k G g+W++ ++ g+ R++k+c++rw +yl Cotton_A_19871_BGI-A2_v1.0 14 KGRWTAEEDEILANYIKANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48 | 2.8e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++E+e +v+ + lG++ W+ Ia+ ++ gRt++++k++w+++l Cotton_A_19871_BGI-A2_v1.0 67 RGNITADEEETIVKFHSALGNR-WSFIAAQLP-GRTDNEIKNYWNSHL 112 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.956 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.0E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.02E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.892 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-13 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.91E-9 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051555 | Biological Process | flavonol biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MGRSPCCEKV GLKKGRWTAE EDEILANYIK ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI TADEEETIVK FHSALGNRWS FIAAQLPGRT DNEIKNYWNS HLSRKIYSFS 120 KTIKETKPTD LDAIKTAEDH QRKRRCGRTS RSAMKRQKLA LMSLGISKTV TPNAQESSHG 180 ETLEMHGSCM HSNAAGQPQG NYDESGSNGG RALSTNSGEE SSGDGIENEV LLGPYEWLDN 240 EIKRLSCILQ RSQGADPSGN HGGVVDSVNG VIKDTQNDAR ERESYGIGSS SSNTTEITDH 300 HGDEWQMCNS SVDFIGDFQW CDDHQWELSW DDLEKAFCWS WDDANGDDEA GKNT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-23 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis primarily in cotyledons and leaves (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00598 | PBM | Transfer from AT5G49330 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Triggered by HY5 in response to light and UV-B. {ECO:0000269|PubMed:19895401}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ459140 | 7e-66 | AJ459140.1 Gossypium hirsutum partial myb114 gene, clone pGhMYB114. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017647509.1 | 0.0 | PREDICTED: transcription factor MYB12 | ||||
Swissprot | Q9FJ07 | 2e-75 | MY111_ARATH; Transcription factor MYB111 | ||||
TrEMBL | A0A1U8ING1 | 0.0 | A0A1U8ING1_GOSHI; transcription factor MYB12 | ||||
STRING | Gorai.011G195100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 8e-78 | myb domain protein 111 |