PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19854_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 319aa    MW: 34896.5 Da    PI: 7.9647
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19854_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer110.87.2e-3561116458
                 ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                                 ++YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre++
  Cotton_A_19854_BGI-A2_v1.0  61 ITYKECLKNHAASLGGHALDGCGEFMPSPTATpTDPTSLKCAACGCHRNFHRREPD 116
                                 79******************************9********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-1941114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.9E-2961115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.6E-3262114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.3363114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.15E-20190260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-30193261IPR009057Homeodomain-like
TIGRFAMsTIGR015651.0E-26199256IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDIALASTAP KSPEAEPEPE PVSETPTRIQ PTKPVSFTNG VLKRHKPHHH HHHHQAPPIV  60
ITYKECLKNH AASLGGHALD GCGEFMPSPT ATPTDPTSLK CAACGCHRNF HRREPDDPPP  120
TTATPTIEYQ PHHRHHPPPP ATASQPNRSP NSASPPPISS SYYPSAPHML LALSGGLTNS  180
HLPAGGLTPN TANLGSNSKK RFRTKFTQYQ KDKMLEFAEK IGWKIQKRDE EDIQEFCHEV  240
GVDRGVLKVW MHNNKNTFGK KDQANGGSST RDGNGSVRFN HEEHNNSNND NNNGQNLNHH  300
FETDSVAHVG TNGCSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-221982571675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5276781e-139HQ527678.1 Gossypium herbaceum clone NBRI_E_EYT27PB03GDSA6 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017616103.10.0PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG02e-78ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A2P5SJQ61e-160A0A2P5SJQ6_GOSBA; Uncharacterized protein
STRINGGorai.012G054300.11e-156(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.15e-64homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]