PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_19848_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 321aa MW: 36981.8 Da PI: 7.5285 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.7 | 3.8e-52 | 11 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 + pGfrFhPtdeelv +yLk+k+++k+l++ + i+++diyk+ePwdLpk ++++ekewyf+++rd+ky+++ r+nr+t+ g+W Cotton_A_19848_BGI-A2_v1.0 11 MLPGFRFHPTDEELVEFYLKNKIQQKSLPI-QLITQLDIYKYEPWDLPKLAASGEKEWYFYCPRDRKYRNSARPNRVTRGGFW 92 579***************************.89***************8888899**************************** PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+d++++s+ ++ glkk+Lvfy+gra kg ktdW+mhe+rl Cotton_A_19848_BGI-A2_v1.0 93 KATGTDRPIYSSdATKCLGLKKSLVFYRGRAAKGIKTDWMMHEFRL 138 ***********8556669**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-58 | 9 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.524 | 11 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-26 | 13 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MDDVEKVEDV MLPGFRFHPT DEELVEFYLK NKIQQKSLPI QLITQLDIYK YEPWDLPKLA 60 ASGEKEWYFY CPRDRKYRNS ARPNRVTRGG FWKATGTDRP IYSSDATKCL GLKKSLVFYR 120 GRAAKGIKTD WMMHEFRLPS LSDKTLSAND SWAICKIFRK TNCMAQRALS YTSIPSDIPH 180 HYGPFNHFNE VQHAQQWTTS SLPVPNGDLH NNSMFLQCTV DTPSVVLSPD ATMIADDVRN 240 NSKSIDFKGK QQIFNGFSIR LPQDMEGTRN DDGDWGSIPL MGFPFSMSPN VLDSWKPNLP 300 WDTSLYPTEM STTYSTDKYY T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-52 | 13 | 162 | 17 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012458499.1 | 0.0 | PREDICTED: putative NAC domain-containing protein 94 | ||||
Swissprot | Q9FIW5 | 2e-95 | NAC94_ARATH; Putative NAC domain-containing protein 94 | ||||
TrEMBL | A0A2P5WR65 | 0.0 | A0A2P5WR65_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.012G054800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 1e-97 | NAC domain containing protein 94 |