PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19848_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 321aa    MW: 36981.8 Da    PI: 7.5285
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19848_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.73.8e-52111381128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                 + pGfrFhPtdeelv +yLk+k+++k+l++ + i+++diyk+ePwdLpk ++++ekewyf+++rd+ky+++ r+nr+t+ g+W
  Cotton_A_19848_BGI-A2_v1.0  11 MLPGFRFHPTDEELVEFYLKNKIQQKSLPI-QLITQLDIYKYEPWDLPKLAASGEKEWYFYCPRDRKYRNSARPNRVTRGGFW 92 
                                 579***************************.89***************8888899**************************** PP

                         NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 katg+d++++s+  ++  glkk+Lvfy+gra kg ktdW+mhe+rl
  Cotton_A_19848_BGI-A2_v1.0  93 KATGTDRPIYSSdATKCLGLKKSLVFYRGRAAKGIKTDWMMHEFRL 138
                                 ***********8556669**************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-589160IPR003441NAC domain
PROSITE profilePS5100556.52411160IPR003441NAC domain
PfamPF023655.2E-2613138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDDVEKVEDV MLPGFRFHPT DEELVEFYLK NKIQQKSLPI QLITQLDIYK YEPWDLPKLA  60
ASGEKEWYFY CPRDRKYRNS ARPNRVTRGG FWKATGTDRP IYSSDATKCL GLKKSLVFYR  120
GRAAKGIKTD WMMHEFRLPS LSDKTLSAND SWAICKIFRK TNCMAQRALS YTSIPSDIPH  180
HYGPFNHFNE VQHAQQWTTS SLPVPNGDLH NNSMFLQCTV DTPSVVLSPD ATMIADDVRN  240
NSKSIDFKGK QQIFNGFSIR LPQDMEGTRN DDGDWGSIPL MGFPFSMSPN VLDSWKPNLP  300
WDTSLYPTEM STTYSTDKYY T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-521316217170Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458499.10.0PREDICTED: putative NAC domain-containing protein 94
SwissprotQ9FIW52e-95NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLA0A2P5WR650.0A0A2P5WR65_GOSBA; Uncharacterized protein
STRINGGorai.012G054800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.11e-97NAC domain containing protein 94