PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19844_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 228aa    MW: 25059.9 Da    PI: 9.4202
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19844_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-202070256
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g+
  Cotton_A_19844_BGI-A2_v1.0 20 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 70
                                69*******.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-222078IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-322077IPR001471AP2/ERF domain
CDDcd000182.01E-182078No hitNo description
SMARTSM003801.5E-382083IPR001471AP2/ERF domain
PROSITE profilePS5103223.8942077IPR001471AP2/ERF domain
PfamPF008474.4E-142069IPR001471AP2/ERF domain
PRINTSPR003674.6E-112132IPR001471AP2/ERF domain
PRINTSPR003674.6E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAPREKTAAV KGTGNNNEVH FRGVRKRPWG RYAAEIRDPG KKSRVWLGTF DTAEEAARAY  60
DAAAREFRGA KAKTNFPVPC ENLGKGNNCK SNGNNHHHSP SQSSTVESSS REPALMVDSS  120
PLDLNLVQGE AVTGYVPTAV RFPFQQASPV PYIAGRKVFY FEPFVRPGAV KGHPFQRFGF  180
DHHDLHATFN GVQSDSDSSS VVDLNHHEVK SRPLLNIDLN QPAVPEIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-212078261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-212078564ATERF1
3gcc_A7e-212078564ATERF1
5wx9_A2e-2021861580Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7801950.0KP780195.1 Gossypium hirsutum C-repeat binding factor 12 (CBF12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017612639.11e-170PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLA0A1U8PSS81e-167A0A1U8PSS8_GOSHI; ethylene-responsive transcription factor 4-like
TrEMBLA0A2P5XGK91e-167A0A2P5XGK9_GOSBA; Uncharacterized protein
STRINGGorai.010G155900.11e-167(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2470534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.12e-25ERF domain protein 11