PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19831_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 253aa    MW: 28938.4 Da    PI: 7.2488
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19831_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.8e-181360148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+eEd  l+ +v+ +G g+W+++ar  g++R++k+c++rw++yl
  Cotton_A_19831_BGI-A2_v1.0 13 KGPWTEEEDYMLKTYVNVHGEGSWNSVARLSGLKRSGKSCRLRWLNYL 60
                                79********************************************97 PP
2Myb_DNA-binding46.58.8e-1566109146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 rg+ + +E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
  Cotton_A_19831_BGI-A2_v1.0  66 RGNISLQEQLLILQLHSRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 109
                                 788899****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.318864IPR017930Myb domain
SuperFamilySSF466891.68E-3010107IPR009057Homeodomain-like
SMARTSM007172.9E-151262IPR001005SANT/Myb domain
PfamPF002491.3E-161360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-211467IPR009057Homeodomain-like
CDDcd001671.19E-101560No hitNo description
SMARTSM007174.0E-1365113IPR001005SANT/Myb domain
PROSITE profilePS5129417.68465115IPR017930Myb domain
PfamPF002491.2E-1366109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2168113IPR009057Homeodomain-like
CDDcd001674.42E-686109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MTPQSKEDMD VRKGPWTEEE DYMLKTYVNV HGEGSWNSVA RLSGLKRSGK SCRLRWLNYL  60
RPEVKRGNIS LQEQLLILQL HSRWGNRWSK IAQQLPGRTD NEIKNYWRTR VLKQAKQLKC  120
DVNSQEFRDT MRCVWIPRLI ERICASSGSP SAQPSTAYEK TSLLPALSGT SSDSQDAELS  180
SVSDLKDCYN PPSNSNNPNS LQNGRGLWSE NLGGTWNIED GVGFQATEGG ESMESVWNEE  240
NIWFLRQQLY DMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-241010724120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614898.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ10MB43e-74MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A2P5YT980.0A0A2P5YT98_GOSBA; Uncharacterized protein
STRINGGorai.004G146000.11e-167(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.11e-71myb domain protein 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]