PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_19831_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 28938.4 Da PI: 7.2488 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.2 | 3.8e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd l+ +v+ +G g+W+++ar g++R++k+c++rw++yl Cotton_A_19831_BGI-A2_v1.0 13 KGPWTEEEDYMLKTYVNVHGEGSWNSVARLSGLKRSGKSCRLRWLNYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.5 | 8.8e-15 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ + +E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++ Cotton_A_19831_BGI-A2_v1.0 66 RGNISLQEQLLILQLHSRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 109 788899****************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.318 | 8 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.68E-30 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-15 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-21 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.19E-10 | 15 | 60 | No hit | No description |
SMART | SM00717 | 4.0E-13 | 65 | 113 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.684 | 65 | 115 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.2E-13 | 66 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-21 | 68 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.42E-6 | 86 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MTPQSKEDMD VRKGPWTEEE DYMLKTYVNV HGEGSWNSVA RLSGLKRSGK SCRLRWLNYL 60 RPEVKRGNIS LQEQLLILQL HSRWGNRWSK IAQQLPGRTD NEIKNYWRTR VLKQAKQLKC 120 DVNSQEFRDT MRCVWIPRLI ERICASSGSP SAQPSTAYEK TSLLPALSGT SSDSQDAELS 180 SVSDLKDCYN PPSNSNNPNS LQNGRGLWSE NLGGTWNIED GVGFQATEGG ESMESVWNEE 240 NIWFLRQQLY DMI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 10 | 107 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017614898.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q10MB4 | 3e-74 | MYB2_ORYSJ; Transcription factor MYB2 | ||||
TrEMBL | A0A2P5YT98 | 0.0 | A0A2P5YT98_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.004G146000.1 | 1e-167 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47190.1 | 1e-71 | myb domain protein 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|