PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19792_BGI-A2_v1.0
Common NameF383_03320
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 238aa    MW: 26206.8 Da    PI: 4.7704
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19792_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.35.5e-07444539
                    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                                 C+ +e+ +++  C  ++  lC++C  e H        H++
  Cotton_A_19792_BGI-A2_v1.0  4 QCDVCERAPATVICCADEAALCAKCDIEVHAAnklaskHQR 44
                                7*****************************65667777765 PP

2zf-B_box26.71.2e-085385234
                    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeH 34
                                + + C+ ++ek + +fC +++ l+C+dC + +H
  Cotton_A_19792_BGI-A2_v1.0 53 KLPPCDICQEKAAFIFCVEDRALFCRDCDEPIH 85
                                6789**************************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.3147IPR000315B-box-type zinc finger
CDDcd000211.28E-6347No hitNo description
PfamPF006432.8E-5444IPR000315B-box-type zinc finger
SMARTSM003361.5E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501199.0445299IPR000315B-box-type zinc finger
SMARTSM003361.3E-145299IPR000315B-box-type zinc finger
PfamPF006431.4E-65394IPR000315B-box-type zinc finger
CDDcd000212.10E-75598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0009651Biological Processresponse to salt stress
GO:0048573Biological Processphotoperiodism, flowering
GO:0080167Biological Processresponse to karrikin
GO:0090351Biological Processseedling development
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003712Molecular Functiontranscription cofactor activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MKIQCDVCER APATVICCAD EAALCAKCDI EVHAANKLAS KHQRLLLQCL SNKLPPCDIC  60
QEKAAFIFCV EDRALFCRDC DEPIHPAGSL AANHQRFLAT GIRVALSSSC NKNTENNVLE  120
PPNKSAPQTS MKMPAHQQHS SFSSPWAVDD LLELSDIQSL NKKEHSELGE LEWLADIGLF  180
GDQLPQEALA AAEVPQLPIS QSSSTNLYRP TKYSMALKKP RIETPDEDDE FFTVPDLG
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5247550.0HQ524755.1 Gossypium herbaceum clone NBRI_A2_3787-1 simple sequence repeat marker, mRNA sequence.
GenBankHQ5255210.0HQ525521.1 Gossypium herbaceum clone NBRI_A2_3787-2 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012487043.11e-176PREDICTED: B-box zinc finger protein 24-like
RefseqXP_016670516.11e-176PREDICTED: B-box zinc finger protein 24-like
RefseqXP_016748117.11e-176PREDICTED: B-box zinc finger protein 24-like
RefseqXP_017610998.11e-176PREDICTED: B-box zinc finger protein 24-like
SwissprotQ962882e-97BBX24_ARATH; B-box zinc finger protein 24
TrEMBLA0A0B0NVU91e-174A0A0B0NVU9_GOSAR; Salt tolerance-like protein
TrEMBLA0A0D2T2Y81e-174A0A0D2T2Y8_GOSRA; Uncharacterized protein
TrEMBLA0A1U8PA901e-174A0A1U8PA90_GOSHI; B-box zinc finger protein 24-like
TrEMBLA0A2P5XE521e-171A0A2P5XE52_GOSBA; Uncharacterized protein
STRINGGorai.006G229300.11e-175(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27112767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.11e-100DBB family protein
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Imtiaz M, et al.
    Identification and functional characterization of the BBX24 promoter and gene from chrysanthemum in Arabidopsis.
    Plant Mol. Biol., 2015. 89(1-2): p. 1-19
    [PMID:26253592]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]