PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_19752_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | DBB | ||||||||
Protein Properties | Length: 201aa MW: 22286.8 Da PI: 6.3795 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 27.5 | 6.6e-09 | 5 | 43 | 6 | 38 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ ++++e++ fC ++ lCe C + H+ H+ Cotton_A_19752_BGI-A2_v1.0 5 CDVCDKEEATVFCSADEAALCEGCDVGVHHAnklaakHS 43 ***************************974446666665 PP | |||||||
2 | zf-B_box | 29.7 | 1.3e-09 | 56 | 95 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ ++e ++ lfC++++ ++C++C +++H+ H Cotton_A_19752_BGI-A2_v1.0 56 PLCDICQERRAFLFCQEDRAMFCRECDVSIHRAneitqkH 95 78*****************************766666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 11.064 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 7.8E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.6E-7 | 5 | 43 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.54E-6 | 5 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.855 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.0E-13 | 53 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.09E-9 | 56 | 100 | No hit | No description |
Pfam | PF00643 | 4.1E-8 | 56 | 96 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MKIWCDVCDK EEATVFCSAD EAALCEGCDV GVHHANKLAA KHSRFSLLHP SSNEFPLCDI 60 CQERRAFLFC QEDRAMFCRE CDVSIHRANE ITQKHNRFLL TGVKLSPSLS LNPTSSSSET 120 KSSSSHSSKR SRFSLPNNQN FTSPMDKSLA STSTTYRLQD NASISTSNNI SEYLMEKLPG 180 WNVDDFPDPS SGGDANGFCK V |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017618765.1 | 1e-147 | PREDICTED: B-box zinc finger protein 20-like isoform X1 | ||||
Swissprot | Q9LQZ7 | 1e-61 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A1U8K9K4 | 1e-145 | A0A1U8K9K4_GOSHI; B-box zinc finger protein 20-like isoform X1 | ||||
STRING | Gorai.013G033400.1 | 1e-125 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6597 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 4e-59 | salt tolerance homolog2 |