PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_19751_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SRS | ||||||||
Protein Properties | Length: 203aa MW: 23157.1 Da PI: 8.8826 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 88.4 | 1.7e-27 | 11 | 64 | 2 | 55 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqq 55 r+g+++C+dCGn+akk+C ++RCRtCC+s+g++C+th+kstWvpa++r + q Cotton_A_19751_BGI-A2_v1.0 11 RQGNTRCEDCGNKAKKECGFMRCRTCCRSKGYQCQTHIKSTWVPAYRRHRTHPQ 64 57899****************************************987654333 PP | |||||||
2 | DUF702 | 72.8 | 1e-22 | 73 | 134 | 93 | 154 |
DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++++ le+ ++P+ev s+a f++vrvss++d+++e+aY+t+v+i G vfkG+LydqG+++ Cotton_A_19751_BGI-A2_v1.0 73 RQNPSSGLEVGNFPAEVISPATFQRVRVSSMEDEDDEYAYRTSVNIEGRVFKGLLYDQGPHH 134 445677899999************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.1E-23 | 14 | 67 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 6.9E-26 | 17 | 58 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Pfam | PF05142 | 3.1E-20 | 64 | 133 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 8.9E-21 | 85 | 132 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MNELRRMMML RQGNTRCEDC GNKAKKECGF MRCRTCCRSK GYQCQTHIKS TWVPAYRRHR 60 THPQISHNPT RLRQNPSSGL EVGNFPAEVI SPATFQRVRV SSMEDEDDEY AYRTSVNIEG 120 RVFKGLLYDQ GPHHSLGESS SRDQTHLHQQ QPNQIIAADP LTMATTTTTT STTVETLLPF 180 AYASPFNAFM SPSTQFFLHQ PKP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016694534.1 | 1e-151 | PREDICTED: protein SHI RELATED SEQUENCE 3-like | ||||
TrEMBL | A0A1U8K1U2 | 1e-150 | A0A1U8K1U2_GOSHI; protein SHI RELATED SEQUENCE 3-like | ||||
STRING | Gorai.013G033500.1 | 1e-128 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9188 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19790.2 | 3e-49 | SHI-related sequence 7 |