PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19731_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 116aa    MW: 13499.3 Da    PI: 10.2007
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19731_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.22.8e-112982558
                                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58
                                ++ +rk +NRe+ArrsR RKk+ ++ L+ +  +L + N++ +  l+   + +  
  Cotton_A_19731_BGI-A2_v1.0 29 RKRKRKVSNRESARRSRMRKKKHLDDLTAELTQLREDNHQIIMSLNITMQRYLH 82
                                6789***********************************999888766666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.6E-122589IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.1282769IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.9E-1027104No hitNo description
SuperFamilySSF579592.0E-112981No hitNo description
PfamPF001704.4E-92973IPR004827Basic-leucine zipper domain
CDDcd147027.76E-143080No hitNo description
PROSITE patternPS0003603247IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MGSLSGTSSG ASTVTQVSEE LQALLMEERK RKRKVSNRES ARRSRMRKKK HLDDLTAELT  60
QLREDNHQII MSLNITMQRY LHVEAENSVL RAQTNELSGR LESLEDIITF LQWKQW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12833RKRKRK
23149KRKVSNRESARRSRMRKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617713.11e-78PREDICTED: bZIP transcription factor 11-like
SwissprotC0Z2L59e-33BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A0D2S7S37e-69A0A0D2S7S3_GOSRA; Uncharacterized protein
STRINGGorai.013G035200.11e-69(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.11e-34G-box binding factor 6
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]