PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_19720_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 80aa MW: 8947.93 Da PI: 9.4137

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_19720_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.3	1.7e-08	12	57	2	45
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 g+WT+ + + +a + + ++ +W +a+ +g g+t++++k ++ Cotton_A_19720_BGI-A2_v1.0 12 GSWTAKQNKDFERALAVYDKDtpdRWYNVAKAVG-GKTAEEVKRHYE 57 89******************************.********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.425	9	64	IPR017884	SANT domain
SMART	SM00717	8.2E-7	10	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-5	12	61	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-6	12	57	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.72E-12	12	68	IPR009057	Homeodomain-like
CDD	cd00167	1.83E-5	14	60	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MASSSMSSRG SGSWTAKQNK DFERALAVYD KDTPDRWYNV AKAVGGKTAE EVKRHYELLV 60 ADVKYIESGQ VPFPYRSNGN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	4e-35	7	79	3	77	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269\|PubMed:15790677}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269\|PubMed:15790677, ECO:0000269\|PubMed:16236768}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461179.1	6e-54	PREDICTED: protein RADIALIS-like 1
Refseq	XP_017618915.1	6e-54	PREDICTED: protein RADIALIS-like 1
Swissprot	Q58FS3	6e-35	RAD_ANTMA; Transcription factor RADIALIS
TrEMBL	A0A0D2W2J5	1e-52	A0A0D2W2J5_GOSRA; Uncharacterized protein
TrEMBL	A0A2P5VQG3	1e-52	A0A2P5VQG3_GOSBA; Uncharacterized protein
STRING	Gorai.013G036700.1	2e-53	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM221	28	198

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39250.1	5e-34	RAD-like 1

Publications ? help Back to Top
Corley SB,Carpenter R,Copsey L,Coen E Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum. Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73 [PMID:15790677] Costa MM,Fox S,Hanna AI,Baxter C,Coen E Evolution of regulatory interactions controlling floral asymmetry. Development, 2005. 132(22): p. 5093-101 [PMID:16236768] Stevenson CE, et al. Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8 [PMID:16511186] Stevenson CE, et al. Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus. Proteins, 2006. 65(4): p. 1041-5 [PMID:17044043]