PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_19706_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 66aa MW: 7730.07 Da PI: 10.5864

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_19706_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.1	1.4e-15	20	60	10	54
AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 + +g+W+AeIrdp++ +++lg+f+tae Aa+a++a +++++ Cotton_A_19706_BGI-A2_v1.0 20 P-WGKWAAEIRDPRK---GVTVWLGTFDTAEAAARAYDAEARRIR 60 6.********954...4********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	16.924	9	66	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.69E-16	18	64	IPR016177	DNA-binding domain
SMART	SM00380	1.9E-12	19	66	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.2E-21	20	65	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-8	20	58	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence Send to blast
MTRIYIQYTL RLIALLFIYP WGKWAAEIRD PRKGVTVWLG TFDTAEAAAR AYDAEARRIR 60 DKKAKI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269\|PubMed:12913152}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY572463	4e-57	AY572463.1 Gossypium barbadense ethylene response factor 1 mRNA, complete cds.
GenBank	AY781117	4e-57	AY781117.2 Gossypium hirsutum ethylene-responsive element binding protein ERF2 mRNA, complete cds.
GenBank	KP780200	4e-57	KP780200.1 Gossypium hirsutum C-repeat binding factor 17 (CBF17) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017632671.1	6e-39	PREDICTED: uncharacterized protein LOC108475196
Swissprot	Q6K7E6	7e-23	ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBL	Q8GTE5	1e-22	Q8GTE5_CICAR; Transcription factor EREBP-like protein (Fragment)
STRING	XP_010534976.1	7e-23	(Tarenaya hassleriana)
STRING	XP_004510558.1	8e-23	(Cicer arietinum)
STRING	GLYMA19G45200.2	5e-23	(Glycine max)
STRING	AES84434	7e-23	(Medicago truncatula)
STRING	XP_007139068.1	6e-23	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16770.1	2e-13	ethylene-responsive element binding protein

Publications ? help Back to Top
Kim CY, et al. Identification of rice blast fungal elicitor-responsive genes by differential display analysis. Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4 [PMID:10755311] Koo SC, et al. OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33. Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70 [PMID:19607808] Iwamoto M,Takano M Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice. Biotechnol. Lett., 2011. 33(1): p. 173-8 [PMID:20872166] Serra TS, et al. OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors. Plant Mol. Biol., 2013. 82(4-5): p. 439-55 [PMID:23703395] Jisha V, et al. Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice. PLoS ONE, 2015. 10(6): p. e0127831 [PMID:26035591] Lourenço TF, et al. The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors. Plant Physiol., 2015. 169(3): p. 2275-87 [PMID:26381316]