PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_19623_BGI-A2_v1.0

Common Name

F383_34677

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 271aa MW: 29923.4 Da PI: 8.9013

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_19623_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.2	1e-39	31	90	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk++ Cotton_A_19623_BGI-A2_v1.0 31 NDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRA 90 6899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-29	27	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.0E-34	32	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.264	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MDTAQRPQGI EVVKPMEASR GMVERRTRPQ NDQALNCPRC NSTNTKFCYY NNYSLSQPRY 60 FCKTCRRYWT EGGSLRNVPV GGGSRKNKRA LSSPPPPPPA AASSKKLGDL TTPPTPQNPK 120 IHEGQDLNLA YPPPTEDYNS LPKFVEVPYS HKSNHQNSTS SSTHLNAMEL LKTGINSRGL 180 SSFMSMSVSD SNTVYSSGFP MQDFKPTLNF SLDGLETGFG NLKGVEESGA RLFFPMEELK 240 QVPSNANELE QNRGQGESTG YWSGMLGGGH W

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527215	1e-145	HQ527215.1 Gossypium herbaceum clone NBRI_B_EYI1BW404H55EM simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017629079.1	0.0	PREDICTED: dof zinc finger protein DOF1.8-like isoform X1
TrEMBL	A0A0B0N477	0.0	A0A0B0N477_GOSAR; Dof zinc finger DOF4.6-like protein
STRING	Gorai.004G122800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3433	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	8e-48	Dof family protein