PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_19549_BGI-A2_v1.0

Common Name

bHLH064A

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 679aa MW: 76021.9 Da PI: 4.7967

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_19549_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.3	1.2e-12	480	526	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++ Lr+l+P +K++Ka+iL ++eY+k+L+ Cotton_A_19549_BGI-A2_v1.0 480 NHVLAERRRREKLNERVIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 526 7999********************8.....8***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.7E-52	9	186	IPR025610	Transcription factor MYC/MYB N-terminal
SuperFamily	SSF47459	4.06E-18	476	544	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.06	476	525	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-18	480	542	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-10	480	525	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.62E-14	480	530	No hit	No description
SMART	SM00353	1.3E-15	482	531	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010026	Biological Process	trichome differentiation
GO:0010214	Biological Process	seed coat development
GO:2000029	Biological Process	regulation of proanthocyanidin biosynthetic process
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence Send to blast
MAAPPSSRLQ KMLQAAVQSV QWTYSLFWQI CPQQGILIWS DGYYNGAIKT RKTVQPMEVS 60 TEEASLQRSQ QLRELYDSLS SGDTNQPARR PSAALSPEDL TESEWFYLMC VSFSFPPGVG 120 LPGKAYARRQ HVWLTGANEV DSKTFSRAIL AKTVLCIPIL DGVLELGYTE KVQEDLGLVQ 180 HVKTFFNDGQ APNPPPPKPA LSEHSTSNPA ASSDYTRFHS PSVPLVYAAA DPPVNADQGE 240 YNNVDEEEEE EEDDDDEEGD EEPESYSAET GRNTQQVPTE NTLAVVAAEE PSELMQLDMS 300 EDIKLGSPDD ASNNLDSDFN MLAVSQSGNP TVNQRRAALF RDESNRRWQM LQEPSCSSLQ 360 PLSTGPQPMD EMSQEDTHYS QTVSTILQAQ PARWTESPST VNAATYSTQS AFAKWTTHSD 420 PHLHSAVVEG TSQWLLKYIL FTVPFLHNKY HDENSPKSRD AAVAAARFRK GTPNEDLSAN 480 HVLAERRRRE KLNERVIILR SLVPFVTKMD KASILGDTIE YVKQLRKKIQ DLETRNKQME 540 ADNDRPRSAD SMQRNSSSKD QRSGLTTRSS GPDKKKMRIV EATKQKTVEP PPQTEETSVE 600 VSIIESDALL ELQCGYREGL LLDIMQMLRE KLRIEITAVQ SSLNNGFFTA ELRAKVKDNM 660 NGKKVSIMEV KRAINQIIP

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence Send to blast

MAAPPSSRLQ KMLQAAVQSV QWTYSLFWQI CPQQGILIWS DGYYNGAIKT RKTVQPMEVS  60
TEEASLQRSQ QLRELYDSLS SGDTNQPARR PSAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAYARRQ HVWLTGANEV DSKTFSRAIL AKTVLCIPIL DGVLELGYTE KVQEDLGLVQ  180
HVKTFFNDGQ APNPPPPKPA LSEHSTSNPA ASSDYTRFHS PSVPLVYAAA DPPVNADQGE  240
YNNVDEEEEE EEDDDDEEGD EEPESYSAET GRNTQQVPTE NTLAVVAAEE PSELMQLDMS  300
EDIKLGSPDD ASNNLDSDFN MLAVSQSGNP TVNQRRAALF RDESNRRWQM LQEPSCSSLQ  360
PLSTGPQPMD EMSQEDTHYS QTVSTILQAQ PARWTESPST VNAATYSTQS AFAKWTTHSD  420
PHLHSAVVEG TSQWLLKYIL FTVPFLHNKY HDENSPKSRD AAVAAARFRK GTPNEDLSAN  480
HVLAERRRRE KLNERVIILR SLVPFVTKMD KASILGDTIE YVKQLRKKIQ DLETRNKQME  540
ADNDRPRSAD SMQRNSSSKD QRSGLTTRSS GPDKKKMRIV EATKQKTVEP PPQTEETSVE  600
VSIIESDALL ELQCGYREGL LLDIMQMLRE KLRIEITAVQ SSLNNGFFTA ELRAKVKDNM  660
NGKKVSIMEV KRAINQIIP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	3e-21	9	187	9	193	Transcription factor MYC3
4rqw_B	3e-21	9	187	9	193	Transcription factor MYC3
4rs9_A	3e-21	9	187	9	193	Transcription factor MYC3
4yz6_A	3e-21	9	187	9	193	Transcription factor MYC3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	484	489	ERRRRE
2	485	490	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269\|PubMed:20949001}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP698855	0.0	KP698855.1 Gossypium arboreum basic helix-loop-helix protein 064A (bHLH064A) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017623495.1	0.0	PREDICTED: basic helix-loop-helix protein A-like
Swissprot	E3SXU4	0.0	BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBL	A0A0G2UQM0	0.0	A0A0G2UQM0_GOSAR; Basic helix-loop-helix protein 064A
STRING	Gorai.004G215900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9422	28	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	7e-91	bHLH family protein

Publications ? help Back to Top
Hellens RP, et al. Identification of Mendel's white flower character. PLoS ONE, 2010. 5(10): p. e13230 [PMID:20949001] Yan Q, et al. The Basic/Helix-Loop-Helix Protein Family in Gossypium: Reference Genes and Their Evolution during Tetraploidization. PLoS ONE, 2015. 10(5): p. e0126558 [PMID:25992947]