PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19429_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 274aa    MW: 31389.5 Da    PI: 7.6466
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19429_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.1e-1889142457
                                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                                 + +++ +q+++Le+ Fe  +++   ++ +LAk lgL+ rq+ +WFqNrRa++k+
  Cotton_A_19429_BGI-A2_v1.0  89 KKRLNMDQVKALEKSFELGNKLEPGRKLQLAKDLGLKPRQIAIWFQNRRARWKN 142
                                 556899**********************************************95 PP
2HD-ZIP_I/II122.91.6e-3987178192
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 ekk+rl+ +qvk+LE+sFe  +kLep rK +la++Lgl+prq+a+WFqnrRAR+k+kqlEkdy+aLk+ y++ k++n++L+++
  Cotton_A_19429_BGI-A2_v1.0  87 EKKKRLNMDQVKALEKSFELGNKLEPGRKLQLAKDLGLKPRQIAIWFQNRRARWKNKQLEKDYDALKKLYQTAKADNDALQAQ 169
                                 69********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLreelk 92 
                                 +++L+++l 
  Cotton_A_19429_BGI-A2_v1.0 170 NKKLTAQLL 178
                                 *****9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.04E-1871145IPR009057Homeodomain-like
PROSITE profilePS5007116.60183143IPR001356Homeobox domain
SMARTSM003892.6E-1786147IPR001356Homeobox domain
PfamPF000463.4E-1588142IPR001356Homeobox domain
CDDcd000868.23E-1588144No hitNo description
Gene3DG3DSA:1.10.10.602.6E-1990151IPR009057Homeodomain-like
PRINTSPR000311.4E-5114123IPR000047Helix-turn-helix motif
PROSITE patternPS000270118141IPR017970Homeobox, conserved site
PRINTSPR000311.4E-5123139IPR000047Helix-turn-helix motif
PfamPF021831.1E-10143183IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MFQTLHEDQN HFPSPYSLLP CPPQLFHGGM FLHPSFSFIL IHVCMFMMNK LNQCVFSFSG  60
VGKSHQEVHG HGDDDEYSDD DGSHGGEKKK RLNMDQVKAL EKSFELGNKL EPGRKLQLAK  120
DLGLKPRQIA IWFQNRRARW KNKQLEKDYD ALKKLYQTAK ADNDALQAQN KKLTAQLLSL  180
KTKDSNETRI KNENEGSWCS NGSENNYDMN LAIRPATTMT QLLHGSSKPS LHCLKLDQVV  240
HQDQSLACHM FNQDGDEQQG FWPWADQSIK FPLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135143RRARWKNKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016746821.11e-175PREDICTED: homeobox-leucine zipper protein HAT7-like
RefseqXP_017642633.11e-175PREDICTED: homeobox-leucine zipper protein HAT7-like
SwissprotQ004669e-68HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A1U8P6I01e-174A0A1U8P6I0_GOSHI; homeobox-leucine zipper protein HAT7-like
TrEMBLA0A2P5YNG91e-174A0A2P5YNG9_GOSBA; Uncharacterized protein
STRINGGorai.001G256300.11e-159(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2469634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.13e-64homeobox 3