PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19290_BGI-A2_v1.0
Common NameF383_14142
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 269aa    MW: 30508.8 Da    PI: 4.5049
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19290_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.4e-184497457
                                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                                +++++++q+e Le+ Fe ++++  +++ +LAk+lgL+ rqV +WFqNrRa+ k+
  Cotton_A_19290_BGI-A2_v1.0 44 KRRLSTTQVEFLERSFEVENKLESDRKLRLAKELGLQPRQVAIWFQNRRARSKN 97
                                55799**********************************************995 PP
2HD-ZIP_I/II1216e-3943132291
                 HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                 kkrrls+ qv++LE+sFe e+kLe++rK +la+eLglqprqva+WFqnrRAR k+kqlEkdy++L++++d+lk++ ++L ke+
  Cotton_A_19290_BGI-A2_v1.0  43 KKRRLSTTQVEFLERSFEVENKLESDRKLRLAKELGLQPRQVAIWFQNRRARSKNKQLEKDYDSLRATFDKLKADFDNLLKEK 125
                                 9********************************************************************************** PP

                 HD-ZIP_I/II  85 eeLreel 91 
                                 ++L++++
  Cotton_A_19290_BGI-A2_v1.0 126 DDLKNQV 132
                                 ****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.58E-1835100IPR009057Homeodomain-like
PROSITE profilePS5007116.8273898IPR001356Homeobox domain
SMARTSM003897.9E-1741102IPR001356Homeobox domain
CDDcd000862.85E-174399No hitNo description
PfamPF000464.7E-154496IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.3E-1845105IPR009057Homeodomain-like
PRINTSPR000311.3E-56978IPR000047Helix-turn-helix motif
PROSITE patternPS0002707396IPR017970Homeobox, conserved site
PRINTSPR000311.3E-57894IPR000047Helix-turn-helix motif
PfamPF021839.4E-1698139IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEPLWTPSSS SSALQGEKPV MEYEYVNGGD DDLDGSCQPA GVKKRRLSTT QVEFLERSFE  60
VENKLESDRK LRLAKELGLQ PRQVAIWFQN RRARSKNKQL EKDYDSLRAT FDKLKADFDN  120
LLKEKDDLKN QVLTLKEKLL IKETGMENLG SVEAIHSSND EPQKPNPDAS HVPLLACKQE  180
EACSAKSDVF DSDSPHYPDG HGYHSSFIEP ADSSNVFEPD QSDEEDDLSK SLLHPPLFFP  240
KFDCYYDAPA TSCNFSLPVE DQSFWSSLY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19098RRARSKNKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632416.10.0PREDICTED: homeobox-leucine zipper protein ATHB-54 isoform X1
TrEMBLA0A0B0MEQ60.0A0A0B0MEQ6_GOSAR; Homeobox-leucine zipper HOX4
STRINGGorai.005G189800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-37homeobox 1