PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19273_BGI-A2_v1.0
Common NameF383_23355
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 471aa    MW: 50664.8 Da    PI: 7.9484
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19273_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.43e-24134176244
                         WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                                  epgrCrRtDGKkWRCsr++ +++k+CErHlhrgr rsrk++e
  Cotton_A_19273_BGI-A2_v1.0 134 VEPGRCRRTDGKKWRCSRDAAPDQKYCERHLHRGRPRSRKPVE 176
                                 59**************************************987 PP
2QLQ27.59.6e-1178109233
                         QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 
                                 +FT +Q  +L +Q++++Ky+ a+  vP +Ll 
  Cotton_A_19273_BGI-A2_v1.0  78 PFTFSQYKELQRQVMIFKYMKASIAVPLDLLI 109
                                 8**************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009510.003677113IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166615.15678113IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.4E-778110IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.604133177IPR014977WRC domain
PfamPF088792.1E-20135176IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MEKGIFLNGE SGFNMGIGWS LAFQTSDCSS GFAATVASGG AVGVRILQQP FDISPTSTST  60
AHTAFKSPGG MAASLEFPFT FSQYKELQRQ VMIFKYMKAS IAVPLDLLIP TIGSPSVSVA  120
SHSAMGRFSG RADVEPGRCR RTDGKKWRCS RDAAPDQKYC ERHLHRGRPR SRKPVELPNK  180
KTRHTPSQAH PSSSSSTHPQ FVAQPLNQNQ TTCFLGQPSQ KAAPFWPFTS VSSYKEPRTS  240
DWDMNELIPL ADQQWHHLMQ IGTATEGSLF NAVNQSYDKE PLNLISCPNF GPAEDQQRNT  300
SPWLLNPEIV PVEKSPPRGF IDAWSTAVSD DHHANTGTET SDNGKLTLSS LSLSMGINSF  360
RDNETGPIRM GLGVCGYDQE NHEYASKCHL SSWLAPASTP GGPLAEVLRP SATASSPVAG  420
NGNSCSPAMT AVSSPSGVLQ KALASWSDSS GSSSPTIVCS RAKPEIGLML A
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7355320.0EU735532.1 Gossypium arboreum small heat shock protein gene, promoter region and partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017611869.10.0PREDICTED: growth-regulating factor 7-like
TrEMBLA0A0B0MQH80.0A0A0B0MQH8_GOSAR; Protein translocase subunit SecA
STRINGGorai.008G265600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121062731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.18e-34growth-regulating factor 7