PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_19238_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 160aa MW: 17809 Da PI: 5.2179

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_19238_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.4	2.4e-43	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++p+ +reda++sl+yeAear++dPvyG+vg i+ l Cotton_A_19238_BGI-A2_v1.0 10 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVPTFQREDAVNSLAYEAEARLKDPVYGCVGAISVL 92 7******************************************************************************** PP DUF260 84 qqqleqlkaelallkee 100 q+q+ +l+ el++++++ Cotton_A_19238_BGI-A2_v1.0 93 QRQVITLQRELDATNAN 109 *********998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.106	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.7E-43	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MSSSSYSSSP CAACKFLRRK CMPDCIFAPY FPPEEPQKFA NVHKIFGASN VSKLLNEVPT 60 FQREDAVNSL AYEAEARLKD PVYGCVGAIS VLQRQVITLQ RELDATNANL FRYAYNEMPP 120 LRPPPPPPPS AAGQSSGFYY PYQWNDPSDE DNERSSGGNM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-63	7	118	8	119	LOB family transfactor Ramosa2.1
5ly0_B	5e-63	7	118	8	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016673484.1	1e-116	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_016673485.1	1e-116	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_017609648.1	1e-116	PREDICTED: LOB domain-containing protein 25-like
Swissprot	Q8L8Q3	2e-64	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A1U8ICH3	1e-114	A0A1U8ICH3_GOSHI; LOB domain-containing protein 25-like
TrEMBL	A0A2P5YXZ8	1e-114	A0A2P5YXZ8_GOSBA; Uncharacterized protein
STRING	Gorai.006G033100.1	1e-113	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	4e-64	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]