PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19190_BGI-A2_v1.0
Common NameF383_16580
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 483aa    MW: 53381.7 Da    PI: 6.7713
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19190_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-073804132154
                                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                 k +yp++e++++L +++gL+ +q+ +WF N+R +
  Cotton_A_19190_BGI-A2_v1.0 380 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 413
                                 469*****************************87 PP
2ELK28.63.2e-10334355122
                         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                 ELKh+L+++Y+++++++++E++
  Cotton_A_19190_BGI-A2_v1.0 334 ELKHELKQGYKEKIVDIREEIL 355
                                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.6E-20166210IPR005540KNOX1
PfamPF037901.2E-17168209IPR005540KNOX1
SMARTSM012566.7E-29222277IPR005541KNOX2
PfamPF037918.4E-21226276IPR005541KNOX2
PfamPF037891.2E-6334355IPR005539ELK domain
SMARTSM011886.1E-4334355IPR005539ELK domain
PROSITE profilePS512139.969334354IPR005539ELK domain
PROSITE profilePS5007111.726354417IPR001356Homeobox domain
SuperFamilySSF466895.56E-16356420IPR009057Homeodomain-like
SMARTSM003894.7E-11356421IPR001356Homeobox domain
CDDcd000861.05E-11357418No hitNo description
Gene3DG3DSA:1.10.10.603.8E-25361418IPR009057Homeodomain-like
PfamPF059201.4E-17374413IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MAFHHSSTHL SQDLPLHHFT DQQQQQPNQT QQGDQLQETA APNWLNSALL RPQQPHPPQP  60
HPHFSDPNFL NLHTTTTASD STAASQAPNP MLSRSSSSLL HRNHSNVIDD AAAAAAAAVG  120
GGVMAVESGD LKNSISETMN NNKSEGVVVE SGGGGGGDGI VNWQNARYKA EILAHPFYEQ  180
LLSAHVACLR IATPVDQLPR IDAQLAQSQH VVAKYSALGG GSQGLVSDDK ELDQFMTHYV  240
LLLCSFKEQL QQHVRVHAME AVMACWEIEQ SLQSLTGVSP GEGTGATMSD DDDDQVDSDA  300
NLFDTSLDGT DSMGFGPLIP TESERSLMER VRHELKHELK QGYKEKIVDI REEILRKRRA  360
GKLPGDTTSV LKAWWQSHSK WPYPTEEDKA RLVQETGLQL KQINNWFINQ RKRNWHSNPS  420
TSTVSKSKRK SRGLKGEDQI CCNMRNRLTR AMKLILGHFA DVNKLGVYSV ISFILGYGHG  480
RSL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017603264.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A0B0NNK50.0A0A0B0NNK5_GOSAR; Homeobox protein knotted-1-like 3
STRINGGorai.001G035700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-171KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]