PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19143_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 328aa    MW: 36795.4 Da    PI: 7.0113
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19143_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29e-191663148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+eEd +l+d+++++G g+W++ ++  g++R++k+c++rw +yl
  Cotton_A_19143_BGI-A2_v1.0 16 KGPWTPEEDRILIDYIQKHGHGSWRALPNLAGLNRCGKSCRLRWTNYL 63
                                79********************************************97 PP
2Myb_DNA-binding551.9e-1769114148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg+++ eE++ ++++++ lG++ W++Ia +++ gRt++++k++w++++
  Cotton_A_19143_BGI-A2_v1.0  69 RGKFSDEEEQTIINLHAVLGNK-WSAIATHLP-GRTDNEIKNFWNTHM 114
                                 89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.3821163IPR017930Myb domain
SuperFamilySSF466891.52E-3113110IPR009057Homeodomain-like
SMARTSM007171.3E-151565IPR001005SANT/Myb domain
PfamPF002492.0E-171663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-251770IPR009057Homeodomain-like
CDDcd001671.97E-121863No hitNo description
PROSITE profilePS5129426.9164118IPR017930Myb domain
SMARTSM007175.3E-1668116IPR001005SANT/Myb domain
PfamPF002495.3E-1669113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2771118IPR009057Homeodomain-like
CDDcd001675.28E-1271114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MMARPPSGND ENGVKKGPWT PEEDRILIDY IQKHGHGSWR ALPNLAGLNR CGKSCRLRWT  60
NYLRPDIKRG KFSDEEEQTI INLHAVLGNK WSAIATHLPG RTDNEIKNFW NTHMRKKLLQ  120
MGIDPVTHRP RTDHLNILAS LPQLLAAANF NNMNNLLDVN AINRLQLDAA TLAKLHLLHN  180
MLQILGTPAI NAMDFLSGPT FRDHQLSHLQ PTTGEYQPSN LIEASQNTHP LKDLKFSSYI  240
NNDRFASSYS SSSSSLFVAN NNIPSSSIPQ LPALIPASPE HRPAVVENNK INNPNEISNP  300
SSTSTTFEAW GDLMDDEASD SYWRDIIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-28161184105MYB PROTO-ONCOGENE PROTEIN
1h8a_C7e-281611827128MYB TRANSFORMING PROTEIN
1mse_C5e-28161184105C-Myb DNA-Binding Domain
1msf_C5e-28161184105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628886.10.0PREDICTED: transcription factor MYB39
SwissprotQ9S9Z21e-86MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A2P5YEV30.0A0A2P5YEV3_GOSBA; Uncharacterized protein
STRINGGorai.007G348600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.25e-99myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]