PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19125_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 266aa    MW: 30312.1 Da    PI: 8.054
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19125_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP91.41.9e-2844117373
                         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...sec 73 
                                 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ k  +++l+ +++ ++   + c
  Cotton_A_19125_BGI-A2_v1.0  44 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLNQPSKVIDWLLEATKDDVDKLPPLEFHHSlmpNPC 117
                                 79************************************************************966666444334 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-2645111IPR005333Transcription factor, TCP
PROSITE profilePS5136928.56545103IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MISSSREKGC FEAKQEGDGG KVSSSRQWPG FRNPRIVRVS RSFGGKDRHS KVCTIRGLRD  60
RRIRLSVPTA IQLYDLQDRL GLNQPSKVID WLLEATKDDV DKLPPLEFHH SLMPNPCQSS  120
PFTPLMDPNL MFMKDYEGET SMQVEREITD MKGKWIKEQE KLIFPVTNHG SSLPGGFMFN  180
TGTNSMPLNI YNHHWNPSQF TNHGFHHHHQ PENYFHGAIA NTYPPLPSCP PPSTTPSHFP  240
TFPWYGTNTN QDAAGDQDNS KLQFFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-2050104155Putative transcription factor PCF6
5zkt_B7e-2050104155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6208972e-77JX620897.1 Gossypium hirsutum clone NBRI_GE67264 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643453.10.0PREDICTED: transcription factor TCP5
TrEMBLA0A1U8P1R60.0A0A1U8P1R6_GOSHI; transcription factor TCP5-like
STRINGGorai.001G076700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.14e-50TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5