PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18937_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 1029aa    MW: 114988 Da    PI: 7.536
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18937_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.1e-23112212198
                                 EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                 f+kvlt sd++++g +++ +k+a+++     +++ + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD
  Cotton_A_18937_BGI-A2_v1.0 112 FCKVLTASDTSTHGGFSVLRKHATDClpkldMNDATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGD 194
                                 99****************************9555555669******************************************* PP

                                 EEEEEE-SSSEE..EEEEE- CS
                          B3  79 fvvFkldgrsefelvvkvfr 98 
                                 ++vF   + +++el+v+v+r
  Cotton_A_18937_BGI-A2_v1.0 195 SFVFL--RGENGELRVGVRR 212
                                 *****..449999*****98 PP
2Auxin_resp103.33.1e-34238317183
                  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                 a+ha+st++ F v+Y+Pr+  s+F++ ++k+++al++k++vGmRfkm+fe+eds+err+sGt+vgv+d++p  W++SkWrsLk
  Cotton_A_18937_BGI-A2_v1.0 238 ASHAVSTQTLFVVYYKPRT--SQFIIGLNKYLEALSNKFAVGMRFKMKFEGEDSPERRFSGTIVGVEDFSP-LWKDSKWRSLK 317
                                 789***************6..9*************************************************.9********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-39104227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-40105241IPR015300DNA-binding pseudobarrel domain
CDDcd100174.67E-18110206No hitNo description
SMARTSM010191.6E-23112214IPR003340B3 DNA binding domain
PROSITE profilePS5086312.167112214IPR003340B3 DNA binding domain
PfamPF023628.7E-22112212IPR003340B3 DNA binding domain
PfamPF065071.5E-31238317IPR010525Auxin response factor
PfamPF023096.7E-7547603IPR033389AUX/IAA domain
PROSITE profilePS5174527.884567648IPR000270PB1 domain
SuperFamilySSF542776.87E-14567643No hitNo description
PfamPF023091.4E-6613652IPR033389AUX/IAA domain
PfamPF035527.4E-10671822IPR005150Cellulose synthase
PfamPF035524.0E-15826974IPR005150Cellulose synthase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0030244Biological Processcellulose biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0016760Molecular Functioncellulose synthase (UDP-forming) activity
Sequence ? help Back to Top
Protein Sequence    Length: 1029 aa     Download sequence    Send to blast
MMANRVVSFS QTNNVSSEGN GCDDLYMELW KLCAGPLVEL EASTNQTLNQ RIPLFNLPSK  60
ILCRVVHIQL LAEKETDEVY AQVTLLPEPS QSEPTTPDLC PPESQRPTVH SFCKVLTASD  120
TSTHGGFSVL RKHATDCLPK LDMNDATPTQ ELVAKDLHGY EWRFKHIFRG QPRRHLLTTG  180
WSTFVTSKRL VAGDSFVFLR GENGELRVGV RRVVRQHSIM PSSVISSQSM HVGVLATASH  240
AVSTQTLFVV YYKPRTSQFI IGLNKYLEAL SNKFAVGMRF KMKFEGEDSP ERRFSGTIVG  300
VEDFSPLWKD SKWRSLKVQW DEPASIPRPD RVSPWEIEPF AAPIPPSLTQ PVAAKNKRPR  360
PPAEIPATDL SSTTSAPYSG VTHCHDLTPQ NIAAEPKGNE NPVMGHHMWT EMSSGCSSVV  420
QTLNKGSWLS SPGTCVPHHL FPEAREDKTR FSAWPVPSGF SNPQLNEDST FDSTEKAKRS  480
ETSASCRLFG IDLINHSASS TPLERTPAQL STMIMGITEV PGPSNLSSTY SDQKSEISKD  540
SKEKKLEQLQ LSAKENQSMQ SCSSFTRSRT KVQMQGIAVG RAVDLAMFEG YDQLIDELEE  600
MFDIKGELRP RNKWEIVYTD DEGDMMLVGD DPWPEFCNMV RRIFICSSQD VKKLKTGSKL  660
PLASIEGEGT NGGSALTLFA FMEAAKFAAY WLPFCRKNGI TTRSPDEYFA SNCSRTIEPG  720
KIRKENVVET GGVYDEYITD DKVHQAFSKW STDHGFTCQN HPSDSGFVGE KPRQRHYRPL  780
FAKPGLCLYT EEHLTSPHHF KTGALNVRVS AVMTNAPIIL TLRNKRWQIG LLEVASSRYS  840
PITFGVKAMG LFMGLGYSSY AYSSILSIPI ITYSFVPQLA LLNGLNIFPN VSEPWFLLYV  900
FLFLGAYGQD FLEHCVGGGT IQRWCSDQRM WMIKGLSCFL FGLTEFLLKS IGIPTQGFNV  960
TRKAIDDEQR KRYEQGLFEF GQQGNGVNAI VVISFNYLPI YEAVVLRSDK GKMPIRISFT  1020
ATTLVLAVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-15493401355Auxin response factor 1
4ldw_A1e-15493401355Auxin response factor 1
4ldw_B1e-15493401355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1356360KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5819791e-60JX581979.1 Gossypium hirsutum clone NBRI_GE14734 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606694.10.0PREDICTED: auxin response factor 9-like isoform X2
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A0B0MU400.0A0A0B0MU40_GOSAR; Auxin response factor
STRINGGorai.007G026900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27642762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9