PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_18920_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 246aa MW: 28392.6 Da PI: 5.7621 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.8 | 1.4e-41 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 aCaaCk++rrkCa+dC+lapyfp++++++f+n+hklFG+sn++k++k+l++ e+++am+++v++++ara+dPv G++++i++l Cotton_A_18920_BGI-A2_v1.0 14 ACAACKYQRRKCAPDCILAPYFPHDRQRQFQNAHKLFGVSNITKIIKNLNPPEKDIAMRTIVFQSDARANDPVGGCYRIIQEL 96 7********************************************************************************** PP DUF260 84 qqqleqlkaelallkee 100 q+q+e ++ael+l+ ++ Cotton_A_18920_BGI-A2_v1.0 97 QRQIEYSQAELDLVFNQ 113 ***********988665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.879 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-38 | 14 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MSISRTGSNG TTQACAACKY QRRKCAPDCI LAPYFPHDRQ RQFQNAHKLF GVSNITKIIK 60 NLNPPEKDIA MRTIVFQSDA RANDPVGGCY RIIQELQRQI EYSQAELDLV FNQLAICRAQ 120 AAQQQHSDLT LCCDMINPQD PLNSYNSNYY YVQEPHEELF AVNDNNQQHQ LQENYDHSWG 180 IQESTTALST LNIKQSFMKQ SEHNDVHEDE VKHDYGIACE RHEMKFENDD IVERRFVPST 240 QLVMSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-30 | 8 | 114 | 5 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-30 | 8 | 114 | 5 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017629172.1 | 0.0 | PREDICTED: LOB domain-containing protein 22-like | ||||
Swissprot | Q9LRW1 | 2e-65 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | A0A1U8IK25 | 0.0 | A0A1U8IK25_GOSHI; LOB domain-containing protein 22-like | ||||
STRING | Gorai.011G064500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6498 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-67 | LOB domain-containing protein 22 |
Publications ? help Back to Top | |||
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