PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_18860_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 255aa MW: 27694.3 Da PI: 4.5825 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.7e-18 | 56 | 106 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Cotton_A_18860_BGI-A2_v1.0 56 PVYRGVRMRA-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALSIKG 106 68*****998.**********854...59**********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-12 | 56 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.945 | 57 | 114 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.12E-21 | 57 | 115 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-31 | 57 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-35 | 57 | 120 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.54E-30 | 58 | 116 | No hit | No description |
PRINTS | PR00367 | 4.9E-10 | 58 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-10 | 80 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGDSPNSETE SSTLSNNSST PSPPSPCSYG GKRDSGTDPT PDSKRQKRQR DSSKHPVYRG 60 VRMRAWGKWV SEIREPRKKN RIWLGTFSTP EMAARAHDVA ALSIKGNAAI LNFPELAESL 120 PRPASNSPRD VQAAAAKAAS MDFLSNSISS NNSNATSSSS LSSSASTSSS SNVDDVSTPE 180 ELSQIVELPS LGTSFESAEL GNEFVYVDAI DGWFFNPSGM PWYYEENCGY FGEEISMQIQ 240 ESEMITGFGP LLWDH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 52 | 115 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 43 | 49 | KRQKRQR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017645141.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 3-like | ||||
Swissprot | Q9LYD3 | 1e-65 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A1U8PWR6 | 0.0 | A0A1U8PWR6_GOSHI; dehydration-responsive element-binding protein 3-like | ||||
STRING | Gorai.010G075300.1 | 1e-148 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 1e-64 | ERF family protein |
Publications ? help Back to Top | |||
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