PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18860_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 255aa    MW: 27694.3 Da    PI: 4.5825
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18860_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.7e-1856106155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Cotton_A_18860_BGI-A2_v1.0  56 PVYRGVRMRA-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALSIKG 106
                                 68*****998.**********854...59**********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-1256106IPR001471AP2/ERF domain
PROSITE profilePS5103222.94557114IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-2157115IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-3157115IPR001471AP2/ERF domain
SMARTSM003801.5E-3557120IPR001471AP2/ERF domain
CDDcd000184.54E-3058116No hitNo description
PRINTSPR003674.9E-105869IPR001471AP2/ERF domain
PRINTSPR003674.9E-108096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGDSPNSETE SSTLSNNSST PSPPSPCSYG GKRDSGTDPT PDSKRQKRQR DSSKHPVYRG  60
VRMRAWGKWV SEIREPRKKN RIWLGTFSTP EMAARAHDVA ALSIKGNAAI LNFPELAESL  120
PRPASNSPRD VQAAAAKAAS MDFLSNSISS NNSNATSSSS LSSSASTSSS SNVDDVSTPE  180
ELSQIVELPS LGTSFESAEL GNEFVYVDAI DGWFFNPSGM PWYYEENCGY FGEEISMQIQ  240
ESEMITGFGP LLWDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1952115973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14349KRQKRQR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645141.10.0PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD31e-65DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1U8PWR60.0A0A1U8PWR6_GOSHI; dehydration-responsive element-binding protein 3-like
STRINGGorai.010G075300.11e-148(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-64ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]