PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18789_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YB
Protein Properties Length: 135aa    MW: 15394.3 Da    PI: 4.8194
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18789_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.32.5e-5417113298
                       NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 
                                 reqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvtseasdkc++e+rkting+d++walatlGf+dy++pl+
  Cotton_A_18789_BGI-A2_v1.0  17 REQDRLLPIANVGRIMKQMLPPNAKISKEAKETMQECVSEFISFVTSEASDKCRKERRKTINGEDICWALATLGFDDYAAPLR 99 
                                 89********************************************************************************* PP

                       NF-YB  85 vylkkyrelegekk 98 
                                  yl+kyre+eg++k
  Cotton_A_18789_BGI-A2_v1.0 100 RYLNKYREVEGDNK 113
                                 ***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.2E-5312120IPR009072Histone-fold
SuperFamilySSF471134.66E-4019118IPR009072Histone-fold
PfamPF008082.5E-282286IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.1E-195068No hitNo description
PROSITE patternPS0068505369IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.1E-196987No hitNo description
PRINTSPR006154.1E-1988106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MAENVGASGS NDDDGFREQD RLLPIANVGR IMKQMLPPNA KISKEAKETM QECVSEFISF  60
VTSEASDKCR KERRKTINGE DICWALATLG FDDYAAPLRR YLNKYREVEG DNKAANQDKV  120
NNDSYIYIYI YICSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-4416107192Transcription factor HapC (Eurofung)
4g92_B8e-4416107192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5795633e-50JX579563.1 Gossypium hirsutum clone NBRI_GE11831 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016676646.12e-86PREDICTED: nuclear transcription factor Y subunit B-5-like
RefseqXP_017647656.13e-86PREDICTED: nuclear transcription factor Y subunit B-1-like
SwissprotO822488e-54NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2P5YIH21e-86A0A2P5YIH2_GOSBA; Uncharacterized protein
STRINGEOY064796e-74(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-56nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]