PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_18752_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 226aa MW: 24744.9 Da PI: 5.9921 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.1e-19 | 42 | 91 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r r +lg+f+ta eAa ++aa++kl+g Cotton_A_18752_BGI-A2_v1.0 42 TYKGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFDTALEAAMTYDAAARKLYG 91 69****999.**********8...3.35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.65E-30 | 41 | 101 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-20 | 42 | 100 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.4E-13 | 42 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-30 | 42 | 100 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.01 | 42 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-35 | 42 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-9 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-9 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MSASAMGGPG SGEKKQVKRR AQASSRKGCM RGKGGPENAL CTYKGVRQRT WGKWVAEIRE 60 PNRGSRLWLG TFDTALEAAM TYDAAARKLY GSDAKLNLPH LCVNSRFPPP PNTQVAPRGN 120 QPLNPTTSSS NSPIIIRVDE VTPVSNSESD MSQGNMVENN AKFGQNQEEI GGFWENMTMN 180 LPVLDDSIWA EAVMSLDFPV MDDPSIFNTS LVDTTGWDAL QTPWCM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-17 | 43 | 99 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00240 | DAP | Transfer from AT1G75490 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017605307.1 | 1e-168 | PREDICTED: dehydration-responsive element-binding protein 2D-like | ||||
Swissprot | Q9LQZ2 | 4e-55 | DRE2D_ARATH; Dehydration-responsive element-binding protein 2D | ||||
TrEMBL | A0A1U8PEC9 | 1e-166 | A0A1U8PEC9_GOSHI; dehydration-responsive element-binding protein 2D-like | ||||
STRING | Gorai.009G271400.1 | 1e-153 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5399 | 26 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 9e-57 | ERF family protein |
Publications ? help Back to Top | |||
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