PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_18749_BGI-A2_v1.0
Common NameF383_32497
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25889.5 Da    PI: 9.2574
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_18749_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.77.4e-29959151
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                k ien++nrqvt+skRrng++KKA+EL vLCda+v++i+fs+tgkl+e++s
  Cotton_A_18749_BGI-A2_v1.0  9 KLIENSTNRQVTYSKRRNGLFKKANELTVLCDARVSIIMFSTTGKLHEFIS 59
                                569**********************************************86 PP
2K-box94.61.6e-3171169199
                       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                                 yqks g + +++++e++q++l++Lk+ ++nL++e+R+++G++L++Ls+++L  Leq++e+s++ iR++K+++l +qi++++kk
  Cotton_A_18749_BGI-A2_v1.0  71 YQKSLGIDIWNTHYEKMQEQLKQLKEVNRNLRKEIRRRMGDCLNDLSIEDLGALEQEMESSVTLIRDRKYRVLSNQIDTSRKK 153
                                 78999999*************************************************************************** PP

                       K-box  84 ekelqeenkaLrkkle 99 
                                  ++++e++k+L ++le
  Cotton_A_18749_BGI-A2_v1.0 154 VRNVEEIHKNLLHELE 169
                                 ***********99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.455161IPR002100Transcription factor, MADS-box
SMARTSM004325.0E-39160IPR002100Transcription factor, MADS-box
CDDcd002651.68E-38280No hitNo description
SuperFamilySSF554551.23E-36395IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-27323IPR002100Transcription factor, MADS-box
PfamPF003195.4E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-273859IPR002100Transcription factor, MADS-box
PfamPF014868.1E-2182168IPR002487Transcription factor, K-box
PROSITE profilePS5129715.9284174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MARGKIQIKL IENSTNRQVT YSKRRNGLFK KANELTVLCD ARVSIIMFST TGKLHEFISP  60
STTTKQVIDQ YQKSLGIDIW NTHYEKMQEQ LKQLKEVNRN LRKEIRRRMG DCLNDLSIED  120
LGALEQEMES SVTLIRDRKY RVLSNQIDTS RKKVRNVEEI HKNLLHELES LKEDPYGLVD  180
NGGDYDTLIG YQNGGPRIFA LRLQPNHPSL HSGGGSDLTT YPLLD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556480.0KC155648.1 Gossypium hirsutum MADS box protein MADS53 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017604997.11e-166PREDICTED: floral homeotic protein PMADS 1-like
RefseqXP_017604998.11e-166PREDICTED: floral homeotic protein PMADS 1-like
SwissprotP237061e-117DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLA0A0B0N0021e-165A0A0B0N002_GOSAR; Floral homeotic DEFICIENS
STRINGGorai.009G271100.11e-165(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52612750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-100MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  4. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]