PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_18714_BGI-A2_v1.0 | ||||||||
Common Name | F383_21966 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 561aa MW: 60612.1 Da PI: 6.2442 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.1 | 1.1e-30 | 278 | 336 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Cotton_A_18714_BGI-A2_v1.0 278 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHNHP 336 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-33 | 262 | 338 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.09E-27 | 270 | 338 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.792 | 272 | 338 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-36 | 277 | 337 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-26 | 279 | 336 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 561 aa Download sequence Send to blast |
MDDASTPNRS PLPPTIQFPV NPNCTNDEIP RRVIGEMDFF AEKNHKLVDD HVDDSDHANA 60 TDINGSIDRT ALELNVNTGL NLLTTNTSSD QSSVDDGISS NMEDKRAKNE LAVLQVELER 120 MNTENQQLRE MLSQVTSNYN TVQKHLVTLM QQQQDGKPEK NDEQKKSNGG LIVPRQFMDL 180 GIAAAAAAEV DTDEPSLSST EGRSHDLSGS PNVEVASKEF RSRKRGSSEE GRGIGREDSP 240 DGNKVPRFNS SKTVDQTEAT MRKARVSVRA RSETPMITDG CQWRKYGQKM AKGNPCPRAY 300 YRCTMAAGCP VRKQVQRCAE DRTILITTYE GNHNHPLPPA AMAMASTTSS AARMLLSGSM 360 SSADGLMNSN FLTRTLLPCS SSMATISASA PFPTVTLDLT QIPNPLQIPR TEGQFQVPFP 420 NPPPHNLPNS QLSPLPLLPQ IFGQALYNQS KFSGLQMSHD IEQPQMSHQH QQGQQKSLAD 480 TVNAATAAIA ADPNFTAALA AAITSIIGSS HNNNVANNNG ANLTSATNSN GNVTTTTTTT 540 TSNSNSNGNN KISNSSNFAA N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-22 | 264 | 340 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669822 | 0.0 | KF669822.1 Gossypium hirsutum WRKY transcription factor 4 (WRKY4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001314572.1 | 0.0 | probable WRKY transcription factor 31 | ||||
Refseq | XP_017628300.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-145 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A068LCM1 | 0.0 | A0A068LCM1_GOSHI; WRKY transcription factor 4 | ||||
TrEMBL | A0A0B0NSN4 | 0.0 | A0A0B0NSN4_GOSAR; WRKY transcription factor 6-like protein | ||||
STRING | Gorai.001G214800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1057 | 28 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-108 | WRKY family protein |